Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mepo3g06458 | ATGTCTGTTAGAGATGTTGTTAGTTGGAACACAATGATTTCGGGTTATGCTTCTTGTGGGTTTTCTAGTCATGCCTTGGGGGTTTTTGTTGAAATGCAAGGTGCTGGTGTGAGACCAAGTGAGTTTACCTTTTCCATTTTGACATCGCTTGTGTCGAGTTCTTGTCATGCTAAGGAGGTCCATGGTATGATGATTAGAAGTGGGATGGATTTGTCTAATGTGGTGGTTGGGAATTCATTGATAGCTATGTATGGGAAGCTTGGTGTTGTTGATTATTGTTTTGGCGTGATTTTGAGTATGAAGCAGCTTGATGTTATATCTTGGAACTCTTTGATATGGGCCTGTCATAGAGCCGGGCGACAAGAGCTTGCTCTTGAGCAGTTTTGTTGCATGAGAGCTGCGGAGTTGTTGCCTGACGAGTTTACGTGTTCAATACTGATGAGTGTTTGTTCTAACTTGCGATATTTGGAAAAGGGTAAGCAAGTTTTTGCCTTTTGTTTTAAGGTGGGATTTGTTTATAATAGCATTGTATCAAGTGCTGCTATTGACCTCTTTTCCAAATGCAACAGATTGGAGGATACTGTGCGGCTCTTTGAAGAACAAGAGCAATGGGATTCAGCTCTATGCAATTCGATGATTTCATGTTATGCAAGACATGGTTTGGGGGAAGACGCTTTGCAGCTCTTTGTGCTGACCATGAGGAAGAATATCAGACCGACAGAATACACGGTTAGCTGTCTTCTGAGTTCTGTTTCCATTTTCTTGCCAGTAGAAGTGGGAAATCAAATTCATGCTTTGGTTCCTAAATTGGGTTTTGAGTCAGATGCAGTTGTTGCCAATTCACTTGTTGATATGTATACTAAATTTGGATTTATTGATAATGCATTGAATATCTTCAACGAAATAAAAACAAAAGATTTGGTGTCATGGAATACTATAATGATGGGACTGTCTTACAATGGCAAAGTGTCTGTGACCATGGACCACTTCGAGGAATTGATAAGAGAAGGAATGCCACCTGATCGAATAACGTTTGCTGCAGTTCTACTAGCATGCAACTATGGGAACTTGGTTGATGTAGGAATTAAAATGTTTTCCCAAATGGAGATGGAATTTGGAGTAAAACCAGAGGAAGAACATTATTCATATGTTGTGGAGATGTTATGTAGAGCTGGTAACCTCAAAGAAGCCGTTGACATTGTGGAAAAGATGCCGTATAGAACTACCACGGACATTTGGAGGTCAATTCTTTCTGCTTGTGCAGTGTCTGGAGACTTGCAAGATATTGAAGTAGTTGCGATGAAAATAATGGAGAGGGCACCACAGATATCCTTACCTTACTTGGTGTTGGCTCAGGTATATCAGATGAGTGGCAGATGGGAGAGCGCAGTTCGAGTGAGGAAGGCTATGGAAAATATAGGTAGTAAAGAGTTCATAGGATGCAGTTGCGTTGGAATAAAAAACCATGTATATACTTTTGAATCAAATCAATTACAGCATTATGGTGGCAAAGATATTTATCAGCTGCTGAATTTGCTGGTATGGGAGATGGAGACAGAATGTGGTGTCTAA | 1572 | 0.4039 | MSVRDVVSWNTMISGYASCGFSSHALGVFVEMQGAGVRPSEFTFSILTSLVSSSCHAKEVHGMMIRSGMDLSNVVVGNSLIAMYGKLGVVDYCFGVILSMKQLDVISWNSLIWACHRAGRQELALEQFCCMRAAELLPDEFTCSILMSVCSNLRYLEKGKQVFAFCFKVGFVYNSIVSSAAIDLFSKCNRLEDTVRLFEEQEQWDSALCNSMISCYARHGLGEDALQLFVLTMRKNIRPTEYTVSCLLSSVSIFLPVEVGNQIHALVPKLGFESDAVVANSLVDMYTKFGFIDNALNIFNEIKTKDLVSWNTIMMGLSYNGKVSVTMDHFEELIREGMPPDRITFAAVLLACNYGNLVDVGIKMFSQMEMEFGVKPEEEHYSYVVEMLCRAGNLKEAVDIVEKMPYRTTTDIWRSILSACAVSGDLQDIEVVAMKIMERAPQISLPYLVLAQVYQMSGRWESAVRVRKAMENIGSKEFIGCSCVGIKNHVYTFESNQLQHYGGKDIYQLLNLLVWEMETECGV | 523 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mepo3g06458 | 523 | Pfam | Pentatricopeptide repeat domain | 102 | 151 | IPR002885 | - | |
| Mepo3g06458 | 523 | Gene3D | Tetratricopeptide repeat domain | 358 | 490 | IPR011990 | GO:0005515 | |
| Mepo3g06458 | 523 | NCBIfam | pentatricopeptide repeat | 7 | 41 | IPR002885 | - | |
| Mepo3g06458 | 523 | NCBIfam | pentatricopeptide repeat | 209 | 240 | IPR002885 | - | |
| Mepo3g06458 | 523 | Gene3D | Tetratricopeptide repeat domain | 166 | 252 | IPR011990 | GO:0005515 | |
| Mepo3g06458 | 523 | Gene3D | Tetratricopeptide repeat domain | 7 | 165 | IPR011990 | GO:0005515 | |
| Mepo3g06458 | 523 | Pfam | PPR repeat family | 205 | 250 | IPR002885 | - | |
| Mepo3g06458 | 523 | Pfam | PPR repeat family | 4 | 47 | IPR002885 | - | |
| Mepo3g06458 | 523 | Pfam | PPR repeat | 308 | 337 | IPR002885 | - | |
| Mepo3g06458 | 523 | Pfam | PPR repeat | 278 | 306 | IPR002885 | - | |
| Mepo3g06458 | 523 | Gene3D | Tetratricopeptide repeat domain | 258 | 357 | IPR011990 | GO:0005515 | |
| Mepo3g06458 | 523 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 306 | 340 | IPR002885 | - | |
| Mepo3g06458 | 523 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 104 | 138 | IPR002885 | - | |
| Mepo3g06458 | 523 | Pfam | PPR repeat | 373 | 404 | IPR002885 | - | |
| Mepo3g06458 | 523 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 5 | 39 | IPR002885 | - | |
| Mepo3g06458 | 523 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 1 | 520 | IPR046960 | GO:0003723|GO:0009451 | |
| Mepo3g06458 | 523 | FunFam | Pentatricopeptide repeat-containing protein, chloroplastic | 277 | 502 | - | - | |
| Mepo3g06458 | 523 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 205 | 239 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mepo3g06458 | Mepo-Chr3 | 78562351 | 78563960 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mepo3g06458 | 1 | 522 | Glycoside Hydrolase | AT3G49170 | 31.144 | 5.41e-81 | 268 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mepo3g06458 | - | - | gmx:100819993 | 829.32 |