Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mepo3g06413 | ATGATTAGCATTTCCAACTATCGAAAATTTTCACTCCTCAAACGCATTTCATTCGCCAAAATGTTAAGCACAACCGAACCAATTCAAAACATTGAAGAATTAACCGAAACAGTCTCCAAGGTTATGATGTCTTCTCCTGCAATCACACTCGACACCGCTCTCAATCAAACAGGTGTTAGGGTTTCTCCTGAATTAGTCGAAACTGTCCTCAAACGCTTCGAAAATGCCGGTATGTCCGCGTTCCGGTTCTTCGAATGGGCGGAGAAGCAGAGAAATTACTCACATTCCATCAGGGCTTATCACTTGATGATTGAGTCTTTGGCTAAGATTAGGCAGTATCAGATTATGTGGGAACTTGTTAATTCAATGAGGAAAAAGGGTATATTAAATGTTGAAACTTTTTGTATTATTATGAGAAAATATGCTAGGGCTCATAAAGTTGATGAAGCTGTTTATACTTTTAATGTCATGGATAAATATGATACGCCGCAGAATCTTGCTGCTTTTAATGGTTTGTTGAGTGCTTTATGCAAGTCTAGGAATGTTAGGAAGGCTCAGGAGATTTTTGATAGTATGAAGGGTGAGTTTGAGCCGGATTCGAAGACTTATAGTATATTGCTTGGAGGGTGGGGGAAGGAACCGAATCTTCCCAAAGCGAGAGAGGTTTTCGGTGAGATGGTTAGTGCGGGGTTTGATCCTGATATTGTTACTTATGGTATAATGGTTGATATTCTTTGTAAGGCTGGAAGGGTTGATGAAGCTGTTGAGGTTGTTAAGGAGATGGATGATAATGATTGCAGGCCGACGTCTTTTATTTATAGTGTACTTGTTCACACTTATGGAGTGGAGAATCGGATTGAAGATGCTATTGATGCATTCATGGAGATGGAAAGGAATGGAATTGCAGCAGATGTTGTGGTGTATAATGCCTTGATTGGTGCTTTTTGTAAGGCGAACAAATTGAAAAATGTGCATCGGGTGTTAAAAGAGATGGAAAGCAATGGGATTGCTCCCAATTCAAGGACACGTAATGTTATCATGAGTAGTTTGATTAGTCAGGGAGAGACTGATAAAGCTTTTAGTGTCTTTCGTCGAATGATCAAGCTGTGTGAACCGGATGCTGACACTTATACAATGCTGATAAAGATGTTTTGTGAGAGAAATGAAGTGGATATGGCTCTGAAAATATGGAAGTATATGAAGTCAAAACAGTTTGTGCCAAGCTTGCACACCTTTTCAGTCCTTATCAATGGCCTGTGTGCTAAGGGCAATGCAATGAAAGCTTGTATTTTATTGGAAGAAATGATAGAGAAGGGAATTCGACCATCACGTATTACTTTTGGGAAGTTAAGACAATTACTTATAAAGGAAGGGAGAGATGATGTGCTCAAATTTCTGCATGAGAAAATAAATATGCTCGTTAAGGAACCTTTATATGATTAA | 1443 | 0.3902 | MISISNYRKFSLLKRISFAKMLSTTEPIQNIEELTETVSKVMMSSPAITLDTALNQTGVRVSPELVETVLKRFENAGMSAFRFFEWAEKQRNYSHSIRAYHLMIESLAKIRQYQIMWELVNSMRKKGILNVETFCIIMRKYARAHKVDEAVYTFNVMDKYDTPQNLAAFNGLLSALCKSRNVRKAQEIFDSMKGEFEPDSKTYSILLGGWGKEPNLPKAREVFGEMVSAGFDPDIVTYGIMVDILCKAGRVDEAVEVVKEMDDNDCRPTSFIYSVLVHTYGVENRIEDAIDAFMEMERNGIAADVVVYNALIGAFCKANKLKNVHRVLKEMESNGIAPNSRTRNVIMSSLISQGETDKAFSVFRRMIKLCEPDADTYTMLIKMFCERNEVDMALKIWKYMKSKQFVPSLHTFSVLINGLCAKGNAMKACILLEEMIEKGIRPSRITFGKLRQLLIKEGRDDVLKFLHEKINMLVKEPLYD | 480 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mepo3g06413 | 480 | NCBIfam | pentatricopeptide repeat | 133 | 160 | IPR002885 | - | |
| Mepo3g06413 | 480 | NCBIfam | pentatricopeptide repeat | 272 | 304 | IPR002885 | - | |
| Mepo3g06413 | 480 | NCBIfam | pentatricopeptide repeat | 343 | 368 | IPR002885 | - | |
| Mepo3g06413 | 480 | NCBIfam | pentatricopeptide repeat | 306 | 339 | IPR002885 | - | |
| Mepo3g06413 | 480 | NCBIfam | pentatricopeptide repeat | 236 | 269 | IPR002885 | - | |
| Mepo3g06413 | 480 | NCBIfam | pentatricopeptide repeat | 168 | 193 | IPR002885 | - | |
| Mepo3g06413 | 480 | NCBIfam | pentatricopeptide repeat | 410 | 443 | IPR002885 | - | |
| Mepo3g06413 | 480 | NCBIfam | pentatricopeptide repeat | 202 | 235 | IPR002885 | - | |
| Mepo3g06413 | 480 | NCBIfam | pentatricopeptide repeat | 376 | 408 | IPR002885 | - | |
| Mepo3g06413 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 199 | 233 | IPR002885 | - | |
| Mepo3g06413 | 480 | Pfam | PPR repeat | 272 | 301 | IPR002885 | - | |
| Mepo3g06413 | 480 | Pfam | PPR repeat | 133 | 159 | IPR002885 | - | |
| Mepo3g06413 | 480 | Pfam | PPR repeat | 99 | 128 | IPR002885 | - | |
| Mepo3g06413 | 480 | Pfam | PPR repeat family | 165 | 209 | IPR002885 | - | |
| Mepo3g06413 | 480 | Pfam | PPR repeat family | 304 | 350 | IPR002885 | - | |
| Mepo3g06413 | 480 | Pfam | PPR repeat family | 372 | 420 | IPR002885 | - | |
| Mepo3g06413 | 480 | SUPERFAMILY | TPR-like | 96 | 397 | IPR011990 | GO:0005515 | |
| Mepo3g06413 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 269 | 303 | IPR002885 | - | |
| Mepo3g06413 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 234 | 268 | IPR002885 | - | |
| Mepo3g06413 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 373 | 407 | IPR002885 | - | |
| Mepo3g06413 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 165 | 195 | IPR002885 | - | |
| Mepo3g06413 | 480 | Pfam | PPR repeat | 230 | 261 | IPR002885 | - | |
| Mepo3g06413 | 480 | Gene3D | Tetratricopeptide repeat domain | 23 | 193 | IPR011990 | GO:0005515 | |
| Mepo3g06413 | 480 | Gene3D | Tetratricopeptide repeat domain | 263 | 330 | IPR011990 | GO:0005515 | |
| Mepo3g06413 | 480 | Gene3D | Tetratricopeptide repeat domain | 194 | 262 | IPR011990 | GO:0005515 | |
| Mepo3g06413 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 304 | 338 | IPR002885 | - | |
| Mepo3g06413 | 480 | Gene3D | Tetratricopeptide repeat domain | 331 | 477 | IPR011990 | GO:0005515 | |
| Mepo3g06413 | 480 | PANTHER | TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED | 233 | 467 | - | - | |
| Mepo3g06413 | 480 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 408 | 442 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mepo3g06413 | Mepo-Chr3 | 78150240 | 78153342 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mepo3g06413 | 43 | 461 | Glycosyltransferase | AT1G05670 | 23.944 | 3.50e-38 | 146 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mepo3g06413 | - | - | gmx:100790096 | 775.393 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Mepo3g06413 | 3 | 78150240 | 78153342 | Mepo3g06413 | 3 | 78150240 | 78153342 | ECH |