Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06360 ATGGAGAAGATCAACAGCAATGATCAAGAAGATTCAAAACCGGTGGTTCTCATCACAGGTTGCAGCGGAGGAGGTATAGGTAATGCGCTTGCACGCTCCTTCGCAGCCAACAGCTGCAATGTGGTTGCAACCAGCAGGTCACGTTCTACCAGAGCAGATTTGGATCAAGACCCTAGATTCTTCCTTCAAGAACTCGATGTTCAGTCTGATGAGAGCGTGAACAGAGTTGTGGATACTGTTTTGAATAAATTTGGTCGCATCGATGTTCTTGTTAATAACGCTGGTGTTCCTTGTGCGGGTCCATTTGCTGAGGTTCCTCTCTCTGCGATCCAAAACACGTTTGATACTAACGTCTTTGGTTCCATAAGAATGGTCCAGGCTGTGGTTCCTCACATGGCAACTAGGAAACAGGGAAAGATTATTAACGTTGGAAGTGTTACTGGGTTGGCCTCTGGACCTTGGGGCGGTGCTTACAGTGCTTCTAAAGCTGCTCTTCATGCTTTGACAGATACATTGAGATTAGAACTTGAACATTTTGGAATTGATGTTGTGAATGTTGTCCCTGGAGCTGTGAAGTCAAATATGGGAAATTCTGGCATAGCCATCTACAACCGCATGCCAGAGTGGAAACTGTTCAAACCATTTGAAGCAGTAATCCGAGAAAGAGCTCTACTGTCTCGGAGGTTAAGACAAACCCCTACAGACGAGTTTGCTAAACACACCGTAGCTGCTATCCTAAGAAAGAAACCACCTGCATGGTTCTCTTATGGCAATTATTCTACTATCATGGCTATTATGTACCATTTACCTCTCTGTGTTAGAGACTTTCTTTTTAAGAAAGCAATGAAATAA 852 0.4401 MEKINSNDQEDSKPVVLITGCSGGGIGNALARSFAANSCNVVATSRSRSTRADLDQDPRFFLQELDVQSDESVNRVVDTVLNKFGRIDVLVNNAGVPCAGPFAEVPLSAIQNTFDTNVFGSIRMVQAVVPHMATRKQGKIINVGSVTGLASGPWGGAYSASKAALHALTDTLRLELEHFGIDVVNVVPGAVKSNMGNSGIAIYNRMPEWKLFKPFEAVIRERALLSRRLRQTPTDEFAKHTVAAILRKKPPAWFSYGNYSTIMAIMYHLPLCVRDFLFKKAMK 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06360 283 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 IPR002347 -
Mepo3g06360 283 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 IPR002347 -
Mepo3g06360 283 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 IPR002347 -
Mepo3g06360 283 Gene3D - 13 269 - -
Mepo3g06360 283 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 11 282 - -
Mepo3g06360 283 CDD 17beta-HSD-like_SDR_c 15 260 - -
Mepo3g06360 283 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 145 173 IPR020904 GO:0016491
Mepo3g06360 283 FunFam NADPH-dependent 1-acyldihydroxyacetone phosphate reductase 12 264 - -
Mepo3g06360 283 Pfam short chain dehydrogenase 15 197 IPR002347 -
Mepo3g06360 283 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 268 IPR036291 -
Mepo3g06360 283 PRINTS Glucose/ribitol dehydrogenase family signature 85 96 IPR002347 -
Mepo3g06360 283 PRINTS Glucose/ribitol dehydrogenase family signature 179 196 IPR002347 -
Mepo3g06360 283 PRINTS Glucose/ribitol dehydrogenase family signature 16 33 IPR002347 -
Mepo3g06360 283 PRINTS Glucose/ribitol dehydrogenase family signature 158 177 IPR002347 -
Mepo3g06360 283 PRINTS Glucose/ribitol dehydrogenase family signature 132 148 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06360 Mepo-Chr3 77679430 77681006 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06360 17 195 Lipid Metabolism Gene Families AT1G67730 31.250 1.22e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06360 - - gmx:100775989 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g06360 3 77679430 77681006 Mepo3g06360 3 77679430 77681006 ECH