Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06132 ATGTTCACACTCTCATTCTATGCGACCCTTGTGGGTTCTTCTCCTTCTTGTTCATTCCCTTGTTCTTCTTCCAAAACCACCATTTTCAACAAAACCACAACCCCCAACACTAACACAACAACAATTTCTACTACATCCACATCAGCCACACCCAAACATGTCTGGACCCGAACACCTCGTCCACCATTTTCCAACACCAACAAACAACAACAACAACAACAACAACGTCATACCCGAACCCAACAACAACACAAACAACAATCCCCGTACATGGACCGTAGCATCGACATGAATGAACTACTAACCTCAATCGCACAAACCCAAAACATGGAACAACTTTACTCCATAATGTCCCCTTACAACGACAGACAACTTTCAATCCGTTTCATGGTTTCAATTCTCTCTCGTGAACCCGATTGGCAACGTTCCCTCGCAATTCTTGATTGGATGAATGAAATAGCTCAATATTCACCTTCCCTTAACGCTTACAATGTTGTTATTCGCAATGTACTTCGTGCGAAGCAATGGCAACTTGCACATGGACTGTTCGATGAAATGCTTCAAAAGGGTCTTTCACCTGATAAGTACACTTACTCAACGCTTATTACACATTTTAGTAAACAAGGTTTGTTTGATTCATCTTTCTTTTGGCTGCAACAAATGGAACGTGATAAGGTTTCTGGTGACCTTGTTTTGTATAGTAATTTGATTGAGCTTTCGCGGAAGTTGTGTGATTATTCCAAGGCAATTTCCATTTTTAATACGTTGAAAGGTTCGGGTAATATTGTACCTGATCTTATAGCTTATAATACGATGATTAGTGTGTATGGTAAGGCTAAGCTTTTTCGTGAGGCTCGGCTTCTTCTTCAGGAGATGAGAGATAATGGTGTTAACCCGAATACTGCTAGTTACTCGACACTTCTTGCGATTTATGTTGATAATCAGAAGTTTGTTGAGGCGGTTTCTTTGTTTTCTGAAATGAACGAAGTTGAATGTCCGATTGATCTTACTACATGTAATATTATGATTGATGTTTATGGTCAGCTTCAGATGATCAAGGAAGCTGATTGCTTCTTTTGGGGTATGAGGAAAATGGGAATTGAACCTAATGTGGTTAGTTACAACACTGTCTTGAGGGTTTATGGAGAGGCTGGGTTATTTGGTGAAGCTGTTCACCTTTTCAGTTTGATGCAAAAGAAAGGTGTATCGCAGAATGTTGTGACCTACAACACCATGATTAGTATTTATGGCAAATCTCTTGAGCAGGATAAGGCAACGAATCTCATTCAAGAAATGCAAAGTAGAGGTATTCAACCAAATGCTATCACTTATTCAACCATAATATCTATATGGGAAAAGGCAGGGAAGTTGGACAGGGCAGCGATGCTTTTTCACAAGTTAAGGACTTCTGGAGTTAAAATTGATGAGATTCTTTATCAGACAATGATCGTGGCCTATCAGAAGGCTGGTTTAGTTGCTCATGCTAAAAGACTACTTAATGAGCTCAAGCAACCAGATAATGTTTCCAGGGAGATGGCAATCACAATACTTGCTAGAGCAGGTAAAGTTGACGAGGCTATGTGGGTTTTCCGGCAGGCTTTTGATGCTGGAGAGGTGAAAGATATATCTGTATTTGGGTGTATCATTGATATTTTCTCAAGGGAGAGAAAGTATGCACATGTGGTTGAAGTGTTTGAGAAGATGAGAGAGGTTGGACATTTTCCTGATTCTAATGTTATTGCTCTTGTGCTGAATGCTTTTGGAAAGCTGCGCAAGTTTGAGAGAGCAGATGCTTTGTATAAACAGATGTATGAAGAAGGGTGTGTTTTCCCAGACGAAGTTCATTTTCAGATGCTCGGTCTATATGGTGCGAGAATGGATTTCAATATGGTGGAATCATTGTTTGAGAAGCTAGATTCCCATCCTAATATCAACAAGAAGGAGTTGTATTTTGTTGTTGCCAATATTTATGAAAGAGCAAATAGATTTAACGATGCTTCACGAATCATGAACAGGATGAATCACAAAGCAATAGGAAGTCGTGGTAATGCTTAG 2055 0.3971 MFTLSFYATLVGSSPSCSFPCSSSKTTIFNKTTTPNTNTTTISTTSTSATPKHVWTRTPRPPFSNTNKQQQQQQQRHTRTQQQHKQQSPYMDRSIDMNELLTSIAQTQNMEQLYSIMSPYNDRQLSIRFMVSILSREPDWQRSLAILDWMNEIAQYSPSLNAYNVVIRNVLRAKQWQLAHGLFDEMLQKGLSPDKYTYSTLITHFSKQGLFDSSFFWLQQMERDKVSGDLVLYSNLIELSRKLCDYSKAISIFNTLKGSGNIVPDLIAYNTMISVYGKAKLFREARLLLQEMRDNGVNPNTASYSTLLAIYVDNQKFVEAVSLFSEMNEVECPIDLTTCNIMIDVYGQLQMIKEADCFFWGMRKMGIEPNVVSYNTVLRVYGEAGLFGEAVHLFSLMQKKGVSQNVVTYNTMISIYGKSLEQDKATNLIQEMQSRGIQPNAITYSTIISIWEKAGKLDRAAMLFHKLRTSGVKIDEILYQTMIVAYQKAGLVAHAKRLLNELKQPDNVSREMAITILARAGKVDEAMWVFRQAFDAGEVKDISVFGCIIDIFSRERKYAHVVEVFEKMREVGHFPDSNVIALVLNAFGKLRKFERADALYKQMYEEGCVFPDEVHFQMLGLYGARMDFNMVESLFEKLDSHPNINKKELYFVVANIYERANRFNDASRIMNRMNHKAIGSRGNA 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06132 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Mepo3g06132 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Mepo3g06132 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Mepo3g06132 684 NCBIfam pentatricopeptide repeat 162 194 IPR002885 -
Mepo3g06132 684 NCBIfam pentatricopeptide repeat 303 335 IPR002885 -
Mepo3g06132 684 NCBIfam pentatricopeptide repeat 372 405 IPR002885 -
Mepo3g06132 684 NCBIfam pentatricopeptide repeat 583 612 IPR002885 -
Mepo3g06132 684 NCBIfam pentatricopeptide repeat 442 476 IPR002885 -
Mepo3g06132 684 NCBIfam pentatricopeptide repeat 196 229 IPR002885 -
Mepo3g06132 684 NCBIfam pentatricopeptide repeat 544 576 IPR002885 -
Mepo3g06132 684 NCBIfam pentatricopeptide repeat 268 301 IPR002885 -
Mepo3g06132 684 NCBIfam pentatricopeptide repeat 407 441 IPR002885 -
Mepo3g06132 684 NCBIfam pentatricopeptide repeat 338 371 IPR002885 -
Mepo3g06132 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Mepo3g06132 684 Gene3D Tetratricopeptide repeat domain 242 351 IPR011990 GO:0005515
Mepo3g06132 684 Gene3D Tetratricopeptide repeat domain 64 241 IPR011990 GO:0005515
Mepo3g06132 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Mepo3g06132 684 Pfam PPR repeat family 158 206 IPR002885 -
Mepo3g06132 684 Pfam PPR repeat family 405 448 IPR002885 -
Mepo3g06132 684 Pfam PPR repeat family 264 308 IPR002885 -
Mepo3g06132 684 Pfam PPR repeat family 369 403 IPR002885 -
Mepo3g06132 684 Pfam PPR repeat 338 367 IPR002885 -
Mepo3g06132 684 Pfam PPR repeat 478 503 IPR002885 -
Mepo3g06132 684 Pfam PPR repeat 583 608 IPR002885 -
Mepo3g06132 684 Pfam PPR repeat 544 572 IPR002885 -
Mepo3g06132 684 Pfam PPR repeat 514 532 IPR002885 -
Mepo3g06132 684 SUPERFAMILY HCP-like 171 368 - -
Mepo3g06132 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Mepo3g06132 684 FunFam pentatricopeptide repeat-containing protein At5g39980, chloroplastic 351 508 - -
Mepo3g06132 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Mepo3g06132 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Mepo3g06132 684 MobiDBLite consensus disorder prediction 30 90 - -
Mepo3g06132 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Mepo3g06132 684 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 373 675 - -
Mepo3g06132 684 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
Mepo3g06132 684 Gene3D Tetratricopeptide repeat domain 352 506 IPR011990 GO:0005515
Mepo3g06132 684 Gene3D Tetratricopeptide repeat domain 507 683 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06132 Mepo-Chr3 75535438 75537721 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06132 162 607 Glycosyltransferase AT1G05670 24.444 1.03e-40 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06132 - - mtr:11437358 1229.54