Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06129 ATGGCTTACAATTGTCCTATACTTAAGATTGTGCCTTTGTTGAATTTAGGAACAATGGCGAAGAAAATAAAAAAGAGGGGTCGAAGTTCTGTTAAGGAGAAGGCGGTTGTTATCTATTCGCCGCCAGAAAATGTTACGGAATCATGTAACCCCCCAACTACTGACTCTGTTGGTGAGGAGGTTTCAGTTGCAAAAGAGACAAATCCTTGTACTCATCTTGTTAAAGGTATTCAATTAGATATATTGTCTGGTAAGGTTGAGTCTTCTGCACCCATAAGGTGTGAAGGCTGCAGGGAAGGTGCGGCTGATAGGAGGAGCGGTAGAGGAAAAGGTAAACATGGGAAGAAGAAAGGAGGTGCAGACTCAAAATCCGATTCAAAGTCTATATGGGTTTGTTTGGAGTGTGGTCAATACACCTGTGGAGGTGTGGGGCTACCTATAACCCCTAATTGTCATGCAATTGTGCATTCAAAGAAAGCTCGGCACCCGTTAGTGGTTAATATTGAAAAACCTCAACTGTGTTGGTGTTTTCGTTGCAATATGCTTATTCAAGTTGATAAGCTTGAAACTGATGAAGCAAGTCATGTTATATCTGATGTTGTGAAATTGTTAAAAGGACGATCGTCAGGAAAAACTTTAGTAGATGTTGAGGATGTTTCCATTGGGGATGGCAGTGTCACTTCAGAAATTAAGTTAGGATCTCTGTCCACAAGCGGTTCATATGGACAAGGTGGTTATGTGGTTCGAGGCATGGTTAATCTTGGGAATACTTGTTTCTTTAATTCAATCATGCAAAATCTGCTTGCTATGAATAAATTGCGGGACAATTTCCTAAGGATTGATGCCTTTGTTGGGCCACTTATTAGTTCGTTGAAGAAGTTGTTCACTGAAACAAACCCAGAATCAGGATTCAAAAACATTATAAATCCAAGATCCTTTTTTGGTTGTGTATGTTCCAAGTCTCCTCAATTCCGAGGATATCAGCAACATGACAGTCATGAATTGCTTCGTTGTTTACTGGATGGTTTGAGTACTGAAGAACTAGCTGGTAGGAAGCAGAATGGCTCTCTCAAGAGAGATGGGACCTCTTCCAAAACTTTAGTTGATGCATTATTTGGGGGGCAGATATCCAGTACTGTATGTTGCAATGAATGTGGGCATTCCTCAACAGTGTATGAGCCTTTTTTAGATCTTTCCCTCCCTGTTCCAACCAAGAAACCTCCGCCTCGGAAGGCTCAACCAGCACCCCGAACCAGAAAGACTAAACCTCCACCAAAAAAAGGAGCAAAATCTCGAGTCAAAGTTAACAGGGACGATGATCCGTTACCCGTTCAAAATGTACCAAGCCAATCATCCTGCCCTGATCAGTCTGTCACATCAGTTGCTGGAGAATTGGTGGCTTCTTCTGGTGTTTCTACGATATTAGGTTCTAAAGAAATAAGCAGCGAGGCCAAAGTTAACAGGGATGATGGTCTGTTACCCGTTCAAAATGTACCAAGCCAATCATCCAGCCATGAATCATCCTGCCCTGATCAGTCTGTCACATCAGTTGCTGGCGAATTGGTGGCTTCTTCTGGTGTTTCTACGATATTAGGTTCTAAAGAAATAAGCAGCGAGGCCAAAGTTAACAAGAATGATGATCTGTTACCCGTTCAAAATGTACCAAGCCAATCATCCAGCCCTGATCAGTCTGTCACATCAGTTGCTGGAGAATTGGTGGCTTCTTCTGGTGTTTCTACGGTATTAGGTTCTGAAGAAATAAGCAGCAAGGCCAATAAAGAGGACTTATCTCCATCAAATTTGGTCACCGTTGTAGAGTCTCAACAAATGCAAGGGCTTGACAGTGTTGCAAATAAAACGTCAGATTCATCAGATGCTTTTGCATGGTTGGATTATGTGGAAGCTGAAACCAATGAAGAGGACTTATCTCCACCAAATTTGGTTACTGTTGGAGAGTCTCAACAAATGCAAGGGCTTGACAGTGTTGCAAACAAAACATCAGATTCATCAGATGATTTTCCATGGTTGGATTATGTGGAAGCCGAAACCACGATAGATGGATATGCTTCCATATCCCAGAAGGAAGATGCACCGGAGGTACAGGACTCTGAGAACAAGGATGAACGTTTGACTGCATTCCCTGAACAAGCTAGCTGTGAAACCAGTGGTCCTGTTTTTTTCCTTAAGGAGGATCAAAACCAAAGGCCTGATTTTTCTTCATCAAATGAGCGGGAAGATGAGGTTCCTTTACAAGTTCAAAATTCAGAAGTGCTGTTACTTCCATACAAGGAAGAAAGTTCCTCAGCTGGAGGCATCACTGGAATAGATGGTGGGGACTCCTCGTCTGTTTTGGGTGGTGGTCCAGAAGAATCAGAGTTTGATGTCTTTGGTGGCTTATTTAATGAGCCTGAAGTTGTTGCTGGGCCTGCTCCCAGGCCTTCTTCGTCTGGTGATGTGGAAGCTGGCATTATCATAAGAAACATCAGTGAATCTGATCCAGATGAAGTAGATGATACAGATTCTCCAGTCTCTGTAGAGAGTTGTTTGGCACATTTTATAAAGCCCGAGCTTCTTTCAGATGAAAATGCTTGGCATTGTGAGAACTGTTCAAAAATCCTCCAACGTCAGAAGAAGAAAGCAAAAGAGCAGGAAAAAACTCTATCCGATGGAAATACGAGTGGTAGTCATGATGAATCGTGGCATGCATCTAAAGCGTGTTCTTTTAAAGTCAGTAGTACAGGAAATGAAGATATTAAAAATGACAAGAATATAGAAAGTTCAGTTTCACATGTTCAACATGTCACAGAGCTTGAAAACGGTCAAACAGATGAGCTTCATAATTGTGAATTACAGTCTTCAAGTTTACATCAACCCAACAATGAAGAAAGCTGTGATAATTCAGCTGTTGATTCTTCTATTACCGGAAACGTCCAACAAGATGCTCCAATGTTAGATAATGATGACAATGACTCAGAAGAATGCAGTGGCAAAGAGACCGACCTAGAAAGCATTAGAGTGAATAGGGATGCAACTAAAAGGGTCCTCATTTATAGAGCTCCACCTGTCTTGACCATTCATCTGAAGAGATTCAGCCAAGATGCCCGTGGTCGCTTAAGTAAATTAAATGGTCATGTCAACTTCAGAGAAACAATGGATCTTAGACCATATATGGATCCCAGGTGTATTAATGAAGAGGAGTATAGATACCAGTTGGTTGGTGTCGTGGAGCACTCGGGAACCATGAGAGGGGGTCACTATGTTGCTTATGTGAGAGGGGGCCAGAGGAACAGAGAGAAGGTTGATAATAAAGAAAATGAGAGTTCCACATGGTATCACGCTAGTGATGCGTATGTGCGTCAAGTATCCCTTGATGAAGTTCTTCGCTGTGAGGCATACATTTTGTTTTATGAAAGAAATTGA 3420 0.4196 MAYNCPILKIVPLLNLGTMAKKIKKRGRSSVKEKAVVIYSPPENVTESCNPPTTDSVGEEVSVAKETNPCTHLVKGIQLDILSGKVESSAPIRCEGCREGAADRRSGRGKGKHGKKKGGADSKSDSKSIWVCLECGQYTCGGVGLPITPNCHAIVHSKKARHPLVVNIEKPQLCWCFRCNMLIQVDKLETDEASHVISDVVKLLKGRSSGKTLVDVEDVSIGDGSVTSEIKLGSLSTSGSYGQGGYVVRGMVNLGNTCFFNSIMQNLLAMNKLRDNFLRIDAFVGPLISSLKKLFTETNPESGFKNIINPRSFFGCVCSKSPQFRGYQQHDSHELLRCLLDGLSTEELAGRKQNGSLKRDGTSSKTLVDALFGGQISSTVCCNECGHSSTVYEPFLDLSLPVPTKKPPPRKAQPAPRTRKTKPPPKKGAKSRVKVNRDDDPLPVQNVPSQSSCPDQSVTSVAGELVASSGVSTILGSKEISSEAKVNRDDGLLPVQNVPSQSSSHESSCPDQSVTSVAGELVASSGVSTILGSKEISSEAKVNKNDDLLPVQNVPSQSSSPDQSVTSVAGELVASSGVSTVLGSEEISSKANKEDLSPSNLVTVVESQQMQGLDSVANKTSDSSDAFAWLDYVEAETNEEDLSPPNLVTVGESQQMQGLDSVANKTSDSSDDFPWLDYVEAETTIDGYASISQKEDAPEVQDSENKDERLTAFPEQASCETSGPVFFLKEDQNQRPDFSSSNEREDEVPLQVQNSEVLLLPYKEESSSAGGITGIDGGDSSSVLGGGPEESEFDVFGGLFNEPEVVAGPAPRPSSSGDVEAGIIIRNISESDPDEVDDTDSPVSVESCLAHFIKPELLSDENAWHCENCSKILQRQKKKAKEQEKTLSDGNTSGSHDESWHASKACSFKVSSTGNEDIKNDKNIESSVSHVQHVTELENGQTDELHNCELQSSSLHQPNNEESCDNSAVDSSITGNVQQDAPMLDNDDNDSEECSGKETDLESIRVNRDATKRVLIYRAPPVLTIHLKRFSQDARGRLSKLNGHVNFRETMDLRPYMDPRCINEEEYRYQLVGVVEHSGTMRGGHYVAYVRGGQRNREKVDNKENESSTWYHASDAYVRQVSLDEVLRCEAYILFYERN 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06129 1139 ProSiteProfiles Zinc finger UBP-type profile. 68 202 IPR001607 GO:0008270
Mepo3g06129 1139 Gene3D Cysteine proteinases 823 888 - -
Mepo3g06129 1139 MobiDBLite consensus disorder prediction 954 973 - -
Mepo3g06129 1139 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 1069 1086 IPR018200 GO:0004843|GO:0006511
Mepo3g06129 1139 SUPERFAMILY Cysteine proteinases 248 1138 IPR038765 -
Mepo3g06129 1139 MobiDBLite consensus disorder prediction 412 430 - -
Mepo3g06129 1139 MobiDBLite consensus disorder prediction 443 458 - -
Mepo3g06129 1139 MobiDBLite consensus disorder prediction 880 901 - -
Mepo3g06129 1139 MobiDBLite consensus disorder prediction 887 901 - -
Mepo3g06129 1139 FunFam Ubiquitinyl hydrolase 1 65 205 - -
Mepo3g06129 1139 MobiDBLite consensus disorder prediction 978 1001 - -
Mepo3g06129 1139 MobiDBLite consensus disorder prediction 768 789 - -
Mepo3g06129 1139 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 203 IPR013083 -
Mepo3g06129 1139 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 250 265 IPR018200 GO:0004843|GO:0006511
Mepo3g06129 1139 MobiDBLite consensus disorder prediction 689 708 - -
Mepo3g06129 1139 SUPERFAMILY RING/U-box 69 184 - -
Mepo3g06129 1139 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 249 1139 IPR028889 -
Mepo3g06129 1139 Pfam Zn-finger in ubiquitin-hydrolases and other protein 94 186 IPR001607 GO:0008270
Mepo3g06129 1139 SMART Zf_UBP_1 120 173 IPR001607 GO:0008270
Mepo3g06129 1139 Gene3D Cysteine proteinases 898 1139 - -
Mepo3g06129 1139 MobiDBLite consensus disorder prediction 482 515 - -
Mepo3g06129 1139 MobiDBLite consensus disorder prediction 101 124 - -
Mepo3g06129 1139 Gene3D Cysteine proteinases 238 421 - -
Mepo3g06129 1139 MobiDBLite consensus disorder prediction 494 515 - -
Mepo3g06129 1139 Coils Coil 866 886 - -
Mepo3g06129 1139 MobiDBLite consensus disorder prediction 549 568 - -
Mepo3g06129 1139 MobiDBLite consensus disorder prediction 399 458 - -
Mepo3g06129 1139 Pfam Ubiquitin carboxyl-terminal hydrolase 250 1136 IPR001394 GO:0004843|GO:0016579
Mepo3g06129 1139 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 57 1139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06129 Mepo-Chr3 75497922 75502238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06129 1010 1138 Miscellaneous Gene Families AT2G24640 37.879 1.52e-15 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g06129 K11844 - gmx:100776156 1208.74