Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05879 ATGGAATATCACTATGACAGTGGCTCTTCCTCATCTCACTCCAACCACTACCTTCAGCCTCAACAATTAGGGTCAACCTCCCTCACTTCACAACGCAGCCTCCTCTCAGTTCCTTCCCTCAATCCTCGTCACAATCACCACAACAACAACCACACTTCTCACCTCATCACAACCCTCAAATCCCATAACAACTCTTCCTACTCATCCTCTCTCACTCTCTTCGGCAAATTCCTCCTCACTGGTTCATCCGACAGAGAAATCACAACATGGAACAGAACCACCTATGAAGAAGACATAACAACCAACAACAAAGTAATAGCAGGAAAAGGTGCTGTTAAATCCTTAGTAATTCAATCAAACAAAAACACCCTTTTCAGTGCTCATCAAGACCATAAAATCCGTGTCTGGAAACTAACCAACGACCAAACAAAATACACTCATGTAGCAACACTTCCAACACTTGGTGATCGTGCTTCCAAAATCTTAATCCCAAAAAACCATGTCCAAATTCGTAGACACAAAAAATGCACGTGGGTTCATCATGTGGACACTGTTTCTTCCCTTGCTCTTTCTAAAGATGGAAAGTTTTTGTACTCTGTTTCATGGGACAGAACAATCAAAATCTGGAGAACTAAAGATTTCACTTGTTTGGAATCAATAACTAACGCACACGATGATGCTATAAACGCGGTTGTAGTTTCTTATGATGGAACTGTTTACAGTGGATCAGCTGATAAAAGAATCAAAGTGTGGAAGAATCTTCAAGGTGATGATCATAACAAAAAGAAACAGAAACATTCTCTTGTTGATACCTTGGAGAAACACAATTCTGGAATCAATGCTTTGGTTTTAAGCAGTGATGAATCTATTCTGTATTCTGGTGCTTGTGATAGATCAATATTGGTTTGGGAGAAAGAAGACGAAAATGGAAAAATGGTTCTAATTGGTGCATTAAGAGGACACAAGAATTCAATATTGTGTTTAGCTGTTGTGTGGGATTTTGTGTGTAGTGGTTCAGCTGATAAAACCATAAGAATTTGGAGAGGTGTTGGTAGAGATTATTGTTGTTTGTCTATTTTGGAAGGACATCAAGGTTCAATTAAGTGTTTAACTGCAGTAGTTGAACATTGTGATGATAACTCTGAATCAGAAGAACCATCTTTTTTAGTCTATAGTGGTAGTTTGGACTGTGACATTAAGGTTTGGCAGATTTTTGTTCCTGCTATCTAA 1230 0.3878 MEYHYDSGSSSSHSNHYLQPQQLGSTSLTSQRSLLSVPSLNPRHNHHNNNHTSHLITTLKSHNNSSYSSSLTLFGKFLLTGSSDREITTWNRTTYEEDITTNNKVIAGKGAVKSLVIQSNKNTLFSAHQDHKIRVWKLTNDQTKYTHVATLPTLGDRASKILIPKNHVQIRRHKKCTWVHHVDTVSSLALSKDGKFLYSVSWDRTIKIWRTKDFTCLESITNAHDDAINAVVVSYDGTVYSGSADKRIKVWKNLQGDDHNKKKQKHSLVDTLEKHNSGINALVLSSDESILYSGACDRSILVWEKEDENGKMVLIGALRGHKNSILCLAVVWDFVCSGSADKTIRIWRGVGRDYCCLSILEGHQGSIKCLTAVVEHCDDNSESEEPSFLVYSGSLDCDIKVWQIFVPAI 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05879 409 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 178 209 - -
Mepo3g05879 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 304 IPR001680 GO:0005515
Mepo3g05879 409 Pfam WD domain, G-beta repeat 269 303 IPR001680 GO:0005515
Mepo3g05879 409 Pfam WD domain, G-beta repeat 315 347 IPR001680 GO:0005515
Mepo3g05879 409 Pfam WD domain, G-beta repeat 216 252 IPR001680 GO:0005515
Mepo3g05879 409 Pfam WD domain, G-beta repeat 355 402 IPR001680 GO:0005515
Mepo3g05879 409 Pfam WD domain, G-beta repeat 179 209 IPR001680 GO:0005515
Mepo3g05879 409 Pfam WD domain, G-beta repeat 111 137 IPR001680 GO:0005515
Mepo3g05879 409 PRINTS G protein beta WD-40 repeat signature 390 404 IPR020472 -
Mepo3g05879 409 PRINTS G protein beta WD-40 repeat signature 335 349 IPR020472 -
Mepo3g05879 409 PRINTS G protein beta WD-40 repeat signature 197 211 IPR020472 -
Mepo3g05879 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 178 219 IPR001680 GO:0005515
Mepo3g05879 409 SMART WD40_4 98 137 IPR001680 GO:0005515
Mepo3g05879 409 SMART WD40_4 52 91 IPR001680 GO:0005515
Mepo3g05879 409 SMART WD40_4 311 348 IPR001680 GO:0005515
Mepo3g05879 409 SMART WD40_4 265 304 IPR001680 GO:0005515
Mepo3g05879 409 SMART WD40_4 171 210 IPR001680 GO:0005515
Mepo3g05879 409 SMART WD40_4 213 252 IPR001680 GO:0005515
Mepo3g05879 409 SMART WD40_4 353 403 IPR001680 GO:0005515
Mepo3g05879 409 SUPERFAMILY WD40 repeat-like 51 403 IPR036322 GO:0005515
Mepo3g05879 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Mepo3g05879 409 CDD WD40 75 403 - -
Mepo3g05879 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 105 146 IPR001680 GO:0005515
Mepo3g05879 409 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 318 347 - -
Mepo3g05879 409 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 14 404 IPR045182 -
Mepo3g05879 409 Gene3D - 257 407 IPR015943 GO:0005515
Mepo3g05879 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 221 252 IPR001680 GO:0005515
Mepo3g05879 409 FunFam BnaA09g28200D protein 168 256 - -
Mepo3g05879 409 Gene3D - 29 153 IPR015943 GO:0005515
Mepo3g05879 409 ProSiteProfiles Trp-Asp (WD) repeats profile. 318 347 IPR001680 GO:0005515
Mepo3g05879 409 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 272 304 - -
Mepo3g05879 409 Gene3D - 166 256 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05879 Mepo-Chr3 73097068 73098500 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05879 223 403 Acyl Lipid Metabolism Gene Families AT3G18860 26.344 7.41e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05879 - - gmx:100777242 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05879 3 73097068 73098500 Mepo3g05879 3 73097068 73098500 ECH