Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05872 ATGGCTTCAACAGCTTCAAGGTTCATCAAGTGCGTCACAGTTGGAGATGGAGCTGTAGGCAAAACCTGTATGCTCATTTGCTACACCAGCAACAAATTCCCCACTGACTATATCCCTACAGTGTTTGATAATTTTAGTGCAAATGTTGTTGTGGAAGGCATTACTGTCAATTTAGGTCTCTGGGATACAGCTGGGCAAGAGGATTACAATAGGCTGAGGCCTTTGAGCTACAGAGGGGCTGATGTCTTTGTCTTGGCTTTTTCTTTAGTTAGTCGTGCAAGTTACGAGAATGTGTTCAAGAAGTGGATCCCTGAACTCCAGCATTTTGCCCCTGGTGTCCCTGTTGTACTCGTTGGAACCAAATTAGATCTTCGAGAAGACAGGCATTATTTGGCTGATCATCCTGGCATGGTGCCGGTGACTACTGAGCAAGGTGAGGAACTCCGTAAGCAGATTGGAGCTACATATTATATTGAGTGCAGCTCAAAAACTCAGCAGAATGTGAAGGGAGTTTTTGATGCTGCGATTAGGATGGTCATCAAGCCTCCACAAAAGCAACATGAGAAAAGGAAAAAAGCTCGTCGAGGCTGTTTCTTGTCAGTACACTTTCTCTGTATTATATCAACTGCTTTGTATTTGTTACATGTTACAACTTTCCATGCACACTTCATCTTTTGTAATTTTATATTTTTGTTGACAACATCCCCAAGTTTATATTTTATTAGTTATTTGCCCCTTGGCCAAAAAATTATTGTTAGAATAGCCACTAATATGATATAA 780 0.4103 MASTASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGITVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVFKKWIPELQHFAPGVPVVLVGTKLDLREDRHYLADHPGMVPVTTEQGEELRKQIGATYYIECSSKTQQNVKGVFDAAIRMVIKPPQKQHEKRKKARRGCFLSVHFLCIISTALYLLHVTTFHAHFIFCNFIFLLTTSPSLYFISYLPLGQKIIVRIATNMI 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05872 259 PANTHER RHO FAMILY GTPASE 6 199 IPR003578 GO:0005525|GO:0007264
Mepo3g05872 259 SMART rho_sub_3 11 182 IPR001806 GO:0003924|GO:0005525
Mepo3g05872 259 SMART ras_sub_4 6 182 - -
Mepo3g05872 259 PRINTS Transforming protein P21 ras signature 49 71 - -
Mepo3g05872 259 PRINTS Transforming protein P21 ras signature 157 179 - -
Mepo3g05872 259 PRINTS Transforming protein P21 ras signature 32 48 - -
Mepo3g05872 259 PRINTS Transforming protein P21 ras signature 9 30 - -
Mepo3g05872 259 PRINTS Transforming protein P21 ras signature 111 124 - -
Mepo3g05872 259 NCBIfam small GTP-binding protein domain 9 173 IPR005225 GO:0005525
Mepo3g05872 259 Pfam Ras family 10 180 IPR001806 GO:0003924|GO:0005525
Mepo3g05872 259 CDD Rop_like 8 180 - -
Mepo3g05872 259 ProSiteProfiles small GTPase Ras family profile. 4 207 IPR001806 GO:0003924|GO:0005525
Mepo3g05872 259 SMART rab_sub_5 9 182 - -
Mepo3g05872 259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 179 IPR027417 -
Mepo3g05872 259 ProSiteProfiles small GTPase Rab1 family profile. 4 205 - -
Mepo3g05872 259 Gene3D - 2 200 IPR027417 -
Mepo3g05872 259 ProSiteProfiles small GTPase Rho family profile. 2 179 - -
Mepo3g05872 259 FunFam Rac-like GTP-binding protein 3 2 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05872 Mepo-Chr3 73035519 73039091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05872 5 182 EF-hand Containing Proteins AT5G27540 25.140 6.36e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05872 K04392 - gmx:100499774 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05872 3 73035519 73039091 Mepo3g05872 3 73035519 73039091 ECH