Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05740 ATGAACAATAATCAAGCAAAGAATTTTGGTGCATCTGGATCATCATCATTGTTTGGTCCTTTTGGAATATCACCACAGTCTCAACAACAACAATGGAACCATCTTGTCTCTAGATCACACCCTCAAACCCAATTCCATGGTCAATTTCAGTTTTCAGAACCACAATTACATTCTCAGGGTTTTGCACAAGCTCACTATGCACAGTTGCAGTCTCAGGCAGCACTCGCTTCTTTACAATCATCACAAACTCAACCTGTTACTCCATTACATAATGCCAATACTAATACTAATGTTGTATCGACTCCGGCTACCGGTGGCTCCAAGCGAGCAGGAACTCAAAGGAGCCTGTTGCGGACTCCAGGTTCGTCTGGTGCGAACCAAAATGTGTCGGATAAGACAATGGAATTGACTCCCGCTTCTCGGCGAAGGATGAGGGAGTTACCGGAGAAGCAGATGTCGGAAAAAGTGGCTACGATTCTGCCTGAGTCTGCTCTTTATACTCAATTGCTTGATTTGGAGGCTCAGATGGATGCTGCATTTGCTAAGAGAAAGCTTGATATGCAAGAGGCTATTAGAAGTCCTGCCCATGTTCAGAAAACTCTGAGAATTTATGTGTTTAATACATTCTCGAAGCACACAAAAACTGACTCTGAGGATAAAACTGTTGAGGAATCTTCTTGGTCTTTGAAGATAATTGGAAGGGTATTGGAAGATGGGAATGATCCTTTGTCTGGAATTTTGCAGAGATCAAGTCCTTCTGACACAAAGTTTTCTGATTTTTTCAAGAAAATTACTATATGCTTGGATCAAAACCTTTATCCTGAAAATCACATTATTGTGTGGGACAGTGCTCATTCGCCTAAACAACAGGATGGTTTTGAGGTTAAGAGGAAAGGAGACAAAGAATTCACTGCAGTGATCAAATTAGATTTGAAATATTCACCTGAGAAGTTCATGGTCTCAGCACCATTGTCTAGACTCTTAGGGGTTGAGGTCGAGACTCGCCCGAGAATAATAGCTGCTCTTTGGCATTATGTGAAGTCCAGGAAGCTACAATGTGCTGATGAACCTTCATTCTTCATCTGTGATCCTTACCTCCAAAGGGTTTTCGGGGAAGAGAAGATGGGATTCACCACGGCTGCTCAGAAGTTGTTAGAGCATTTGTCACAACCAAAGCCTATATATTTGGAGCATAACATCAAGCTTTCTGGAGATTGCCCATCTGGAACTGCATGTTATGATGTACAGGTTGACATGCCTATTCCACTGCAGAAAGAAATGTCTGTATTCTTGGCTAGCAACAGCATTGAGAGTAACAAAGAGATTGAAACTCAAGATGAGATGATTTCCACTAATCTAAAGAAGATCCAAGAGCATCGTAGAAGACGTGCTTTCTTTCTTAGCTTTAGTCAGTCTCCAGCAGAGTTTATCAATGCTACAATTGCTTCTCAGAGCAAGGATCCAAAACTTGTTGCTGGAGATGCCGGCCGTAATTCTGAAAAGGAGCAATGTCCTGAATTTTATAATCAACCATGGGTTGAGGATGCTGTCATTCGGTACTTGAACCGCAAAGGTGCTGGAAGAGATGCTCGTGAGGGCAACTAA 1605 0.4218 MNNNQAKNFGASGSSSLFGPFGISPQSQQQQWNHLVSRSHPQTQFHGQFQFSEPQLHSQGFAQAHYAQLQSQAALASLQSSQTQPVTPLHNANTNTNVVSTPATGGSKRAGTQRSLLRTPGSSGANQNVSDKTMELTPASRRRMRELPEKQMSEKVATILPESALYTQLLDLEAQMDAAFAKRKLDMQEAIRSPAHVQKTLRIYVFNTFSKHTKTDSEDKTVEESSWSLKIIGRVLEDGNDPLSGILQRSSPSDTKFSDFFKKITICLDQNLYPENHIIVWDSAHSPKQQDGFEVKRKGDKEFTAVIKLDLKYSPEKFMVSAPLSRLLGVEVETRPRIIAALWHYVKSRKLQCADEPSFFICDPYLQRVFGEEKMGFTTAAQKLLEHLSQPKPIYLEHNIKLSGDCPSGTACYDVQVDMPIPLQKEMSVFLASNSIESNKEIETQDEMISTNLKKIQEHRRRRAFFLSFSQSPAEFINATIASQSKDPKLVAGDAGRNSEKEQCPEFYNQPWVEDAVIRYLNRKGAGRDAREGN 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05740 534 Pfam SWIB/MDM2 domain 317 388 IPR003121 -
Mepo3g05740 534 Gene3D SWIB/MDM2 domain 311 395 IPR036885 -
Mepo3g05740 534 MobiDBLite consensus disorder prediction 80 135 - -
Mepo3g05740 534 ProSiteProfiles SWIB/MDM2 domain profile. 313 390 IPR003121 -
Mepo3g05740 534 CDD SWIB_like 320 388 - -
Mepo3g05740 534 MobiDBLite consensus disorder prediction 1 38 - -
Mepo3g05740 534 SUPERFAMILY SWIB/MDM2 domain 311 398 IPR036885 -
Mepo3g05740 534 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 131 487 - -
Mepo3g05740 534 SMART swib_2 314 393 IPR019835 -
Mepo3g05740 534 MobiDBLite consensus disorder prediction 80 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05740 Mepo-Chr3 71542550 71545021 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Mepo3g05740 SWIB 5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05740 K11650 - gmx:100802455 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05740 3 71542550 71545021 Mepo3g05740 3 71542550 71545021 ECH