Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05643 ATGATATCTGTTTATGCAAAATGTTCTAGTTTCATTGATGCACGTAACCTGTTCGACGAAATGCCTCACAGGAACATAGTTTCTTGGACTACAATGGTCTCTGCATTCACCAATTCCGGCATGCCCCATGAAGCTCTTCGTCTCTACAATCAGATGATTGGATCAAAAATTGAACAGCCGAATAAGTTTTTGTACTCTGCGGTTCTCAAAGCGTGTGGTCTTGTGAGAAAGGTTGAATTGGGAAAGATGGTTCATTATCATATATTTCAATCTAAGTTAGATGTTGATATTGTTCTGATGAATGCCCTTTTGGATATGTATGTTAAATGTGGGAGCTTGAGGGATGCTCAACGAGTTTTCTGTGAAATTCCATGTAAAAATGCTACTTCATGGAACACACTCTTTTTGGGGTATGCAAAACAAGGTTTGATTGATGATGCGATCAAACTGTTTGATAAAATGCCGGAACCGGATATTGTATCTTGGAACAGCATCATTGCTGGTCTTGTAGATAATACTAGTTCACATGCGTTGGAATTTGTTTCTGTGATGCATGCAAAGGGCCTTAAAATGGACGAATTCACATTCCCAAGTGTGCTCAAAGCTTGCGCTTTCAGTGATGAATTAATGTTAGGGAGAGAGATTCATTGTTATATTATTAAGTTGGGGTTTGAGTCTAGCTGTTATTGTATATCGGCGTTGATTGATATGTATTCGAGTTGCAAGTTATTGGATGAAGCAACAAAGATTTTTGATCAATACTTCAGGACCTCTTCTGTTTCTGAAAGTTTGGCACTTTGGAATTCTATGCTTTCTGGGTATGTTGTCAATGGAGATTATGTTGAGGCTCTAAGTATGATTTCTCATATGCATCATTCTGGTGTACGTTTTGATTTTTATACCTTCAGTATTATTTTAAAGATCTGCATCAACTTTGATAACTTGAGTTTGGCATCTCAAGTGCATGGATTGGTCATCACTAGCGGCTATGAGTTAGATTGTGTTGTTGGGAGCATTCTCATTGATCTATATGCAAAACAGGGCAGTATTAACAATGCGTTAAGATTGTTTGAGAGGTTGCCAGATAAAGATGTTGTGGCTTGGTCGAGTTTGATTACTGGTTTTGCTAGATTCGGTTCAGATAAGTTAGCTTTTTCCCTTTTCATGGATATGGTTCATTTGGGTCTTCAGATTGATCATTTTGTTATTTCAATTGTGCTAAAAGCTTGCTCAAGTTTGGCATCTCATCAACATGGCAAGCAAGTTCATTCTTTATGTCTTAAGAAGGGGTATGAATCAGAGGGAGTAATTACAACTGCTCTGATTGATATGTATGCAAAATGTGGTGACATCGAGGATGCCTTATCTTTGTTTGGTTGTCTTTCGGAAATTGATACCATGAGTTGGACAAGTATAATCGTGGGATGTGCACAAAATGGAAGAGCAGATGAAGCAATAAGTCTTCTGCATAAAATGATAGAATCTGGTACAAAGCCAAATAAAATCACCATTCTAGGTGTTCTCACTGCTTGTAGGCATGCTGGCCTAGTTGAAGAGGCATGGGATGTGTTTAATTCTATTGAAACAAATCATGGATTGATACCTTGCCCAGAGCATTACAATTGTATGATCGATATACTTGGTCAAGCAGGACGTTTTGAAGAAGCAGTAAAATTGATTAGTGAAATGCCTTATAAACCCGAGAAAACTATATGGTCTTCCTTGCTTGGTGCCTGTGGAACTTACAAGAACAGACATCTTGCAAATATTGTTGCCGAGCATCTCCTTGCCACCTCACCAGAAGATGTTTCTGTATACATAATGCTGTCAAATGTTTATGCAGCTCTTGGAATGTGGGATAGTGTTAGCAAAGTCAGAGAGACTGTAAAAAAAATCGGCAAAAAAGGAGCTGGAAAAAGCTGGATTGAGATCTCAAGTTGA 1941 0.3823 MISVYAKCSSFIDARNLFDEMPHRNIVSWTTMVSAFTNSGMPHEALRLYNQMIGSKIEQPNKFLYSAVLKACGLVRKVELGKMVHYHIFQSKLDVDIVLMNALLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLFLGYAKQGLIDDAIKLFDKMPEPDIVSWNSIIAGLVDNTSSHALEFVSVMHAKGLKMDEFTFPSVLKACAFSDELMLGREIHCYIIKLGFESSCYCISALIDMYSSCKLLDEATKIFDQYFRTSSVSESLALWNSMLSGYVVNGDYVEALSMISHMHHSGVRFDFYTFSIILKICINFDNLSLASQVHGLVITSGYELDCVVGSILIDLYAKQGSINNALRLFERLPDKDVVAWSSLITGFARFGSDKLAFSLFMDMVHLGLQIDHFVISIVLKACSSLASHQHGKQVHSLCLKKGYESEGVITTALIDMYAKCGDIEDALSLFGCLSEIDTMSWTSIIVGCAQNGRADEAISLLHKMIESGTKPNKITILGVLTACRHAGLVEEAWDVFNSIETNHGLIPCPEHYNCMIDILGQAGRFEEAVKLISEMPYKPEKTIWSSLLGACGTYKNRHLANIVAEHLLATSPEDVSVYIMLSNVYAALGMWDSVSKVRETVKKIGKKGAGKSWIEISS 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05643 646 SUPERFAMILY TPR-like 124 627 IPR011990 GO:0005515
Mepo3g05643 646 Pfam PPR repeat family 465 511 IPR002885 -
Mepo3g05643 646 Pfam PPR repeat family 266 309 IPR002885 -
Mepo3g05643 646 Pfam PPR repeat family 24 72 IPR002885 -
Mepo3g05643 646 Pfam PPR repeat family 363 411 IPR002885 -
Mepo3g05643 646 FunFam Pentatricopeptide repeat-containing protein chloroplastic 419 514 - -
Mepo3g05643 646 NCBIfam pentatricopeptide repeat 468 500 IPR002885 -
Mepo3g05643 646 NCBIfam pentatricopeptide repeat 266 298 IPR002885 -
Mepo3g05643 646 NCBIfam pentatricopeptide repeat 130 155 IPR002885 -
Mepo3g05643 646 NCBIfam pentatricopeptide repeat 540 563 IPR002885 -
Mepo3g05643 646 NCBIfam pentatricopeptide repeat 27 61 IPR002885 -
Mepo3g05643 646 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 317 418 - -
Mepo3g05643 646 Gene3D Tetratricopeptide repeat domain 436 646 IPR011990 GO:0005515
Mepo3g05643 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Mepo3g05643 646 Gene3D Tetratricopeptide repeat domain 1 125 IPR011990 GO:0005515
Mepo3g05643 646 Gene3D Tetratricopeptide repeat domain 126 210 IPR011990 GO:0005515
Mepo3g05643 646 Gene3D Tetratricopeptide repeat domain 313 426 IPR011990 GO:0005515
Mepo3g05643 646 Gene3D Tetratricopeptide repeat domain 211 312 IPR011990 GO:0005515
Mepo3g05643 646 FunFam Pentatricopeptide repeat-containing protein At3g49710 74 210 - -
Mepo3g05643 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Mepo3g05643 646 FunFam Pentatricopeptide repeat-containing protein At4g08210 515 644 - -
Mepo3g05643 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 536 566 IPR002885 -
Mepo3g05643 646 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 137 644 IPR046960 GO:0003723|GO:0009451
Mepo3g05643 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 465 499 IPR002885 -
Mepo3g05643 646 Pfam PPR repeat 99 124 IPR002885 -
Mepo3g05643 646 Pfam PPR repeat 539 564 IPR002885 -
Mepo3g05643 646 Pfam PPR repeat 439 461 IPR002885 -
Mepo3g05643 646 Pfam PPR repeat 130 156 IPR002885 -
Mepo3g05643 646 Pfam PPR repeat 232 253 IPR002885 -
Mepo3g05643 646 Pfam E motif 582 643 IPR046848 -
Mepo3g05643 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Mepo3g05643 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 25 59 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05643 Mepo-Chr3 70406566 70408506 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05643 1 644 Glycoside Hydrolase AT3G49170 30.501 8.15e-107 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05643 - - gmx:100780678 1019.22