Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05014 ATGCCGACGCCGGTAAGCTCAGCGCGACAATGTTTAACCGACGAAGCAGCGCGTGCTCTCGACGAAGCAGTCTCCGTAGCGCGTAGACGTAGCCATCCTCAAACAACCTCTCTCCACGCCATCTCAGCTTTACTCGCTCTCCCCTCCAACGCTCTACGCGCCGCCTGCTCATGCACACGCGCCACCACCTTCCCTTACTCCCCTCGTCTCCACTTCCGTGCCCTAGAACTCTCAGTCGGAGTCTCCCTCGACCGTCTCCCCACCACCAAAACCACCGCCGTCGTCTCCTCCGCAGATGACGGCGGCCCACCAGTGTCAAACTCTCTCATGGCAGCCATTAAACGCTCTCAAGCAAACCAACGTCGTCATCCAGATAGCTTCCATTTGCTACAGATAATGCAGCAACAGCAACAAAACCAGAATCAAACTGCGTCGTTTTTGAAAGTTGAGTTGAAGCATTTCATTCTCTCTATTCTTGATGATCCTATAGTTAGTAGGGTTTTTGCAGAAGCTGGTTTTCGTAGCTATGATGTTAAGTTTGCTTTACTTCAACCACCACCACCACCACCATCTTCTAGATTCTTTCACCGTTCTTCTCCTCCGGTTTTTTTATGTAATATTGAACCGGACCGGTTTGAAACGGTTCGGTTCGATGAGAATTCAAGAAGGGTTGTTGAGGTTTTAGCTGGGAAGAGTGGGAGTAACGGTAAGAGAAATCCTCTTTTGATGGGTGTTTATGCTAAAACCGCTTTAAAAAGGTTTGTAGAGTTAGTTCAAAGTGGAAAAGTTGGTTTTTTACCTAATGAGCTTGATGGGTTAAAAGTGGTTTCTATTGAAAATGAGATTTTTGAGTTTCTTGTTGGAAATGGGAGTGAAGAGAAGATGGGGTTGAGATTTGATGAAGTGGGTCATTTAGTTAAACAAAGTTTAGGTCCTGGTGTTGCTGTAAGTTTTGGGGAGATTGAGGTTTTTGTGAAGAACAATAACGATGATGATGTTATTGATGATGGTGTTGTGTATGTTGTTTCAAAGTTGACAAGGTTGTTGGAGGTTTATGGTGGGAAGATTTGGCTAGTAGGTGTAGCAGGAAATTGTGATGTTTATACTAAGTTTTTGAGGTTGTTCCCTAATGTTGAAAAAGATTTGGATTTGCATGTTTTGCCTGTGACATCTGCTACTCCTTCTATGGAAGGACTATACTCTAAATCCAGCTTAATGGGGTCCTTTGTTCCATTTGGTGGATTCTTTTCTACACCTTCTGATTTCAGAAATCCAAATCCATCTTCAACTCTTTGTGACACATGCAATAAAAAGTATGAACAAGAAGTTGCTGATAATTATGTGAATGTAGGACCTTCTTCTTCATCATCAACAAGCTTACCTTGGTTACAAAAGATGAATGTGGATTCAGATAGAGGATTGGGTTTGGCAAAGACCAATGAAGATAACACAAGTTTGAATGCTAAGATCTTCGGATTGCAGAGGAAATGGAGTGATATCTGTCAACATCTTCATCAAAACAAATCATTACCTGAAATCAATATTTCCCAAACATTAACAGGGTTCCAAGCTCCATTCCACGAGGGGTTTCGATTCGGTAGAGGAACTAGCAGCCTTAATGAAATCCACTGTTCTAATCCAATTCCCTACATGTCTAAAGAGTTACAAAGTTCATTTCCATCCAAACAGATGTTACCATTTTCACAACCTTTTGATACTACTCTTAGTGCCAAAGATAAAACTGAACATGTACCGGAAGTTTCAAAATTATACATACAAAATCCTCTCCTTAACCACAAGCCATCTTTGTCCCTTAATCCTGTCACCACGGATTTGGTTTTGGGAACGACATATACATCAGTTACTCATGAGCCAGATACCCCGAAACTAAGTGATCATAAGAAGCATCTTCAGCACTTGTCGGATTCTCTTTCGACTGATTTTGATGCTATGAATGAGAGTACTTCAAACCAAATTGCTAGATCCTCTTCCTACTCGGGTCATAATTCCGATGGAAAATTTGAAATGGTTGATTTCAAGTCACTTTACAAACTTCTTATCGAAAAAGTTTGGTGGCAAGATGAGGCAATATATTCCATCATCAATATTATGACACTTTGTAGATCAGGTGACGAAAAGCGTAGTGGATTGAATGTTAGAGCCGACACATGGTTTTCTTTCCTTGGACCAGATAGAGTTGGAAAAAGAAAAATTGCTTCAGTACTTGCAGAAACTCTATTTGGAAGCAAACAATGCTTAATCTCAGTGGATTTAAGCTCTAAGGACACGTTTCAACCATTGAACTCGATTTTCGAATGTCACGATGTGCTTAGGAGGAAGACAGTTGTGGATTATATTGCTGGCGAATTGAGTAAAAAGCCACGTTCGGTTGTGTTTCTTGAAAATATCGATAAAGCTGATTTAATTGTGCAGAATAGTTTGTTACAAGCTATAAGAACAGGTAAATTTCCATACTCACATGGTAGGGAAATCAGCATCAACAATTCAATATTTGTTGTGACCTCTTCTGTTTTCAAAGTTAGCGGGCTTTTTAATATGGAAAAGGAACCAAAAATATTTCCCGAGGAAAGAATCCTTGAAGCTAAAAGATGTCAAATTGAATTATCAATTGGACATGCTTCTGAGGATGTCTTTAGAAGCGGTAGCAAAAATGTGAGGGTTTCAAAGAGAAATGGAACATTTCTGAATAAAAGAAAGCTCTGTGAAACTCAAAGCAGTGATTCCAATGAGAAAGTACCTAGCAAGACAATGAAACATATCAGAGAGGCGTCACGGTCGTATCTGGATTTGAATATGCCTCTAGAAGAGGAAGTGGAGGATGGTGATTGTGAAAATGAATCTGTAGTTCAAAATCATGAAACATGGTTAAATGATTTCCTTGCACAAATTGATGGAAAAGTGGTTTTTAAGCCATTCAATTTTGATTTACTTGCTGAGCAAGTAATCGAACACATTGACAAACAATTTCAAACACCATTCAGATCAAATTTTGTGCTGGAAATTGATTATGAGGTCATGTCAGAGATACTTGCAGCCGCTTGGTTATCAGACAAGAAAAAAGCAGTGGAAGATTGGATTGAACATGTTCTAGGAAGTAGCTTTGTCGAAGCACAAAAAAAGTATCGCAATGTAGCTGAGTATGTCATGAAATTGGTTAAATGTGAAAGCATTTTTGTGGAAGAGCAAGCTACAGAAGTATGCCTTCCAGCTAGAATTAACTTGAACTAA 3249 0.3998 MPTPVSSARQCLTDEAARALDEAVSVARRRSHPQTTSLHAISALLALPSNALRAACSCTRATTFPYSPRLHFRALELSVGVSLDRLPTTKTTAVVSSADDGGPPVSNSLMAAIKRSQANQRRHPDSFHLLQIMQQQQQNQNQTASFLKVELKHFILSILDDPIVSRVFAEAGFRSYDVKFALLQPPPPPPSSRFFHRSSPPVFLCNIEPDRFETVRFDENSRRVVEVLAGKSGSNGKRNPLLMGVYAKTALKRFVELVQSGKVGFLPNELDGLKVVSIENEIFEFLVGNGSEEKMGLRFDEVGHLVKQSLGPGVAVSFGEIEVFVKNNNDDDVIDDGVVYVVSKLTRLLEVYGGKIWLVGVAGNCDVYTKFLRLFPNVEKDLDLHVLPVTSATPSMEGLYSKSSLMGSFVPFGGFFSTPSDFRNPNPSSTLCDTCNKKYEQEVADNYVNVGPSSSSSTSLPWLQKMNVDSDRGLGLAKTNEDNTSLNAKIFGLQRKWSDICQHLHQNKSLPEINISQTLTGFQAPFHEGFRFGRGTSSLNEIHCSNPIPYMSKELQSSFPSKQMLPFSQPFDTTLSAKDKTEHVPEVSKLYIQNPLLNHKPSLSLNPVTTDLVLGTTYTSVTHEPDTPKLSDHKKHLQHLSDSLSTDFDAMNESTSNQIARSSSYSGHNSDGKFEMVDFKSLYKLLIEKVWWQDEAIYSIINIMTLCRSGDEKRSGLNVRADTWFSFLGPDRVGKRKIASVLAETLFGSKQCLISVDLSSKDTFQPLNSIFECHDVLRRKTVVDYIAGELSKKPRSVVFLENIDKADLIVQNSLLQAIRTGKFPYSHGREISINNSIFVVTSSVFKVSGLFNMEKEPKIFPEERILEAKRCQIELSIGHASEDVFRSGSKNVRVSKRNGTFLNKRKLCETQSSDSNEKVPSKTMKHIREASRSYLDLNMPLEEEVEDGDCENESVVQNHETWLNDFLAQIDGKVVFKPFNFDLLAEQVIEHIDKQFQTPFRSNFVLEIDYEVMSEILAAAWLSDKKKAVEDWIEHVLGSSFVEAQKKYRNVAEYVMKLVKCESIFVEEQATEVCLPARINLN 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05014 1082 Pfam AAA domain (Cdc48 subfamily) 725 844 IPR003959 GO:0005524|GO:0016887
Mepo3g05014 1082 Gene3D - 656 978 IPR027417 -
Mepo3g05014 1082 CDD RecA-like_ClpB_Hsp104-like 678 846 - -
Mepo3g05014 1082 Gene3D - 10 184 IPR036628 -
Mepo3g05014 1082 SUPERFAMILY Double Clp-N motif 12 127 IPR036628 -
Mepo3g05014 1082 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 725 743 IPR001270 GO:0005524
Mepo3g05014 1082 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 832 846 IPR001270 GO:0005524
Mepo3g05014 1082 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 799 817 IPR001270 GO:0005524
Mepo3g05014 1082 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 673 844 IPR027417 -
Mepo3g05014 1082 ProSiteProfiles Clp repeat (R) domain profile. 8 188 IPR004176 -
Mepo3g05014 1082 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1053 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05014 Mepo-Chr3 62758190 62764869 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g05014 - - tpra:123913467 1652.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05014 3 62758190 62764869 Mepo3g05014 3 62758190 62764869 ECH
Mepo3g05014 3 62758190 62764869 Mepo3g05536 3 69370085 69374649 ECH
Mepo3g05014 3 62758190 62764869 Mepo7g01808 7 27724963 27730436 ECH
Mepo3g05536 3 69370085 69374649 Mepo3g05014 3 62758190 62764869 ECH
Mepo3g05014 3 62758190 62764869 Mepo7g01808 7 27724963 27730436 PCT