Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04660 ATGCTTCCTCAGCGAATGAAGAAAGCAGTTACCGATAACCCTAAAAAACTTGCCAACTTGATTGATCTCGTTAACCTTCCTTCTACCCTCAGAGACTTCGTCGGTCAATCTCAGACTTCTCGTTTATCTTGTTTCATGCGTGTTTGGTCCTACATCAAAACCAACAATCTCCAGGATCCAAATAACAAAAATGTGGTAAACTGTGATGAGAAGTTGAAAGGCATTTTACTTGGGAAACCTCAGGTTGATTTAGCAGAACTTCCAGCACTTATCAAGCTGCATTTTCCGAAAGAGCCCAAGTGA 303 0.4125 MLPQRMKKAVTDNPKKLANLIDLVNLPSTLRDFVGQSQTSRLSCFMRVWSYIKTNNLQDPNNKNVVNCDEKLKGILLGKPQVDLAELPALIKLHFPKEPK 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04660 100 CDD SWIB-MDM2_like 24 95 - -
Mepo3g04660 100 Gene3D SWIB/MDM2 domain 15 100 IPR036885 -
Mepo3g04660 100 ProSiteProfiles SWIB/MDM2 domain profile. 19 97 IPR003121 -
Mepo3g04660 100 SMART swib_2 20 100 IPR019835 -
Mepo3g04660 100 SUPERFAMILY SWIB/MDM2 domain 16 97 IPR036885 -
Mepo3g04660 100 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 10 100 - -
Mepo3g04660 100 Pfam SWIB/MDM2 domain 24 95 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04660 Mepo-Chr3 58039864 58042663 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Mepo3g04660 SWIB 5.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04660 - - adu:107471538 194.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g04660 3 58039864 58042663 Mepo3g04660 3 58039864 58042663 ECH