Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g04326 ATGCATCTTCTCTCAAAATCTTCCATCCCCTCAACTTTCCTCCTCTTCCTTATTTTCTTCTCCCATTTCTCTTCTATCTCTGCCTCATATTCCACAACATGTTCCGGCATAGTGCCGTTCCGACACCGCGCCGACACGATTTCCATAACCGATTTCGGCGGTGTCGGCGACGGCAAAACGCTGAACTCAAAGGCATTCAGGGCAGCTATTTATAGGATTCAGCATTTAAGGAGACGTGGTGGCACGCTCCTTTATGTGCCTCCTGGTGTGTACTTAACGGAGAGCTTCAATCTTACTAGTCATATGACTCTTTATCTTGCTGCCGGTGCTGTTATTAAAGCCACACAGAGGTTGCGGGATTGGCCTTTAATTGCACCTTTACCATCTTATGGAAGAGGAAGGGAGCTCCCAGGAGGAAGGTATATAAGTTTTATCCACGGAGATGGAGTTCGTGATGTAATCATCACAGGTGAGAATGGGACAATTGATGGGCAAGGAGATGTATGGTGGAACATGTGGAGGCAGAGAACTCTTCAATTTACAAGACCAAACCTTGTTGAATTCTTGAATTCAAGAAATATTATCATTTCAAATGTGATTTTCAAGAATTCTCCCTTCTGGAATATACATCCAGTTTACTGCAGCAATGTTGTTGTTCGATATGTCACGATTTTGGCTCCTCGCGACTCTCCTAACACTGATGGAATTGACCCAGATTCAAGTTCAAATGTCTGCATAGAGGACTCATACATATCAACAGGAGATGATCTTGTGGCTGTGAAGAGTGGATGGGATGAATATGGTATTTCATACGGCCGTCCTAGCAATGGCATCACGATCCGACGTATAACCGGATCGTCTCCATTTGCCGGCATTGCTGTAGGAAGTGAAACATCAGGCGGAGTACAGAATGTACTCGCCGAGCACATCAACCTCTTTAACATGGGAGTTGGTATCCACATTAAGACAAACATTGGAAGAGGAGGACTTATCAAGAATATAACAGTGTCTAATGTGTATATAGAAAATTCAAGGCAAGGAATAAAAATTGCTGGTGATGTAGGTGATCATCCAGATGAAAATTTTAACCCTAATGCTCTACCAGTTGTGAAGGGAATTACAATTAAGAGTGTTTGGGGTGTGAAGGTTTTGCAAGCTGGTTTGATACATGGTTTGAGAAATTCACCTTTTACTGAGATTTGTTTCTATGATATTAACCTTCATGGCGAGACAGGATCAGGTAGATCTCCACCCTGGAAGTGTTCTGATGTTTTTGGATTTTCAAAGCAGGTTAGTCCTTGGCCATGTTCTCAGCTGAGCAGCCAAGAGCCTGGGTCATGTACCGATTATTCATGA 1356 0.4322 MHLLSKSSIPSTFLLFLIFFSHFSSISASYSTTCSGIVPFRHRADTISITDFGGVGDGKTLNSKAFRAAIYRIQHLRRRGGTLLYVPPGVYLTESFNLTSHMTLYLAAGAVIKATQRLRDWPLIAPLPSYGRGRELPGGRYISFIHGDGVRDVIITGENGTIDGQGDVWWNMWRQRTLQFTRPNLVEFLNSRNIIISNVIFKNSPFWNIHPVYCSNVVVRYVTILAPRDSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGISYGRPSNGITIRRITGSSPFAGIAVGSETSGGVQNVLAEHINLFNMGVGIHIKTNIGRGGLIKNITVSNVYIENSRQGIKIAGDVGDHPDENFNPNALPVVKGITIKSVWGVKVLQAGLIHGLRNSPFTEICFYDINLHGETGSGRSPPWKCSDVFGFSKQVSPWPCSQLSSQEPGSCTDYS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g04326 451 PANTHER PECTIN LYASE-RELATED 14 443 - -
Mepo3g04326 451 Gene3D - 29 420 IPR012334 -
Mepo3g04326 451 SUPERFAMILY Pectin lyase-like 39 440 IPR011050 -
Mepo3g04326 451 SMART pbh1 302 323 IPR006626 -
Mepo3g04326 451 SMART pbh1 214 240 IPR006626 -
Mepo3g04326 451 SMART pbh1 241 273 IPR006626 -
Mepo3g04326 451 SMART pbh1 275 296 IPR006626 -
Mepo3g04326 451 SMART pbh1 331 352 IPR006626 -
Mepo3g04326 451 Pfam Glycosyl hydrolases family 28 143 424 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g04326 Mepo-Chr3 52610670 52615287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g04326 12 441 Glycoside Hydrolase AT4G23820 75.581 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g04326 - - gmx:100785590 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g04326 3 52610670 52615287 Mepo3g04326 3 52610670 52615287 ECH