Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03934 ATGACTTCTTTGAGCAGAGAATTGGTGTTTCTCATACTCCAATTTCTGGAGGAGGAGAAGTTCAAAGAATCTGTGCACAAGCTTGAGAAAGAATCCGGGTTTTTCTTCAATATGAAATACTTTGAGGAAAAAGTACAGGCCGGTGAATGGGAGGAAGTTGAGAAGTATTTATCAGGGTTTACCAAAGTTGATGATAATAGATACTCCATGAAAATATTCTTTGAAATCAGGAAGCAGAAATACCTGGAAGCACTTGATAGGCAAGACAAGCCAAAGGCTGTTGAGATATTAGTGGGTGATTTGAAAGTATTCTCGACCTTCAATGAGGAACTATACAAAGAAATCACCCAACTGTTAACTCTTACTAATTTCAGGGAGAACGAGCAGTTGTCTAAGTATGGTGACACCAAAACTGCTCGAGGGATTATGCTGTTAGAGTTAAAAAAGCTCATAGAGGCGAATCCTCTGTTCCGCGATAAGCTTGTCTTCCCTACTCTGAAGTCGTCAAGATTGCGGACATTAATCAATCAAAGTTTGAACTGGCAACACCAGCTATGCAAAAACCCAAGGCCAAACCCAGATATAAAAACTTTATTTATTGATCACTCGTGTACACCTTCCAATGGTCCTCTAGCACCAACACCTGTCAATCTTCCAGTTGCTGCTGTTGCAAAGCCTGCTGCTTATACTTCACTTGGAGTGGGAGCTCATGGTCCCTTTCCACCTGCGGCAGCAACTGCTAATGCGAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGTTTCATCATCTGTCCAAGCAGCTGTTGTCACAGCATCAACCATACCCGTCCCTCATAATCAAGTGTCGATCTCGAAGCGCCCGATAACACCTTCAACAACTCCTGGCATGGTTGAGTACCAGAGTGCTGATCATGAACAGCTAATGAAAAGACTCCGGCCTGCTCCTTCTGTGGAGGAGGTTTCTTATCCTTCAGCTCGACAAGCCTCTTGGTCGCTGGATGATCTTCCACGAACAGTAGCCATGTCTTTGCATCAAGGGTCCTCTGTGACAAGCATGGATTTTCACCCTTCTCACCAAACCTTACTCCTTGTTGGTTCAAATAATGGTGAAATTTCACTTTGGGAACTTGGGATGCGAGAAAGGTTGGTGTCCAAACCATTCAAGATATGGGACATATCAGCATGCTCATTACCATTTCAGGCAGCTGTTGTCAAAGATACACCTTCTGTTAGTCGTGTCACATGGAGCCTTGATGGAAGTTTTGTGGGTGTTGCATTTACGAAACATTTGATTCACATATACGCCTACAATGGATCAAATGAGCTTGCCCAGCGTGTGGAGATTGATGCCCATATTGGTGGTGTGAATGACTTGGCATTTGCTCATCCAAATAAACAACTTTGTATTGTCACTTGTGGAGATGATAAGTTGATAAAGGTGTGGGATTTAACGGGACGAAGGCTATTTAACTTTGAAGGGCATGAGGCTCCAGTATATTCTATCTGTCCTCATCACAAGGAGAACATTCAGTTCATATTTTCAACTGCCATTGATGGAAAAATAAAAGCCTGGCTATATGATAATATGGGTTCTAGGGTTGACTATGATGCCCCTGGTCACTGGTGTACTACAATGCTTTACAGTGCTGATGGAACTAGATTATTCTCTTGTGGGACGAGTAAAGACGGTGAGTCATTCCTTGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGAACATACAATGGGTTCAGAAAGAAATCTGCTGGTGTAGTGCAGTTTGACACAACCCAAAATCGATTTTTGGCTGCTGGTGAAGACGGCCAAATAAAGTTTTGGGACATGGACAATGTTAACCCTCTAACAAGCACTGAAGCGGACGGTGGACTACAGGGACTTCCACACTTGAGATTCAATAAGGAAGGAAATCTTCTTGCTGTTACTACCGCAGATAATGGATTCAAAATTCTTGCTAATGCTGGTGGTCTTAGATCCCTAAGAACGGTTGAAACTCCAGCATTTGAAGCATTGAGGTCTCCTATTGAATCTGCCGCAAACAAGGTATCTGGCTCTTCTGCTGTTAATGTTGGTCCTGTGAGCTGTAAAGTGGAAAGGAGCTCCCCTGCGAGGCCTTCTCAAATTCTTAATGGAGTTGATCCTGCGGGTAGAAATGTGGAAAAACCTAGGACAGTGGAAGATGTAATGGATAGAACTAAATCATGGCAGCTCTCCGAAATTGTGGATCCTGCCCACTGTCGGTTAGTTACCATGCCTGACAGCACAGATACTTCCAGCAAGGTTGTTCGACTTTTATATACAAATTCTGGTGCTGGTATTTTGGCACTTGGTTCAAATGGTGTTCAGAAGCTGTGGAAGTGGTCTCGGAATGATCAGAATCCTAGTGGGAAGGCGACTGCTAGTGTTGTTCCGCAACATTGGCAACCCAACAGTGGTCTTCTTATGACCAATGATGTTTCTGGTGTCAACCTTGAAGAAGCAGTTCCTTGCATTGCACTCTCAAAGAATGATTCATATGTTATGTCTGCATGTGGCGGAAAGGTTTCTTTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGTCACCACCTCCCGCCTCTACGTTTCTGGCTTTCCACCCTCAAGATAACAACATCATAGCCATTGGGATGGAGGATTCAACTATTCATATTTATAATGTTAGAGTGGATGAGGTGAAATCAAAATTGAAGGGTCACCAAAAGCGAATTTCTGGTTTAGCTTTTTCAACCAATCTTGGCATCTTGGTTTCATCTGGTGCTGATGCTCATCTTTGCGTGTGGAGCATTGATACATGGGAGAAAAGAAAATCAGTTCCTATACAACTACCTGTGGGGAAGGCTCCTGTTGGTGAAACTCGTGTACAGTTCCATTCAGACCAACTTCGATTATTGGTATCCCATGAGACTCAGTTGGCAATATATGATGCCTCGAAGATGGAACGCATTAGACAGTGGGTTCCACAAGATGTTCTGTCTGCTCCTATATCATATGCAGCTTATTCTTGCAACAGTCAGTTAATTTTTGCTACATTTTGCGATGGCAACACTGGGGTTTTTGACGCTGACAGCTTGAGACTAAGATGTCGCATTGCACCATCAACATACTTCACAGCAACGACTTTAAGCGGAAGCCAAGCTGTGTATCCTTTTGTTGTGGCAGCTCATCCACTCGAGCCCAACCAATTTGCCCTTGGATTGACTGATGGGTCAGTGAAAGTGATAGAGCCCAATGAATCAGAGGGAAAGTGGGGATCCAGTCCACCTATGGATAATGGAATGATGAATGGTAGGGCAGCATCATCTACAAGCAACCACACACCCGATCAGGGTACACAAAGATAA 3390 0.4348 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLTLTNFRENEQLSKYGDTKTARGIMLLELKKLIEANPLFRDKLVFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFIDHSCTPSNGPLAPTPVNLPVAAVAKPAAYTSLGVGAHGPFPPAAATANANALAGWMANASVSSSVQAAVVTASTIPVPHNQVSISKRPITPSTTPGMVEYQSADHEQLMKRLRPAPSVEEVSYPSARQASWSLDDLPRTVAMSLHQGSSVTSMDFHPSHQTLLLVGSNNGEISLWELGMRERLVSKPFKIWDISACSLPFQAAVVKDTPSVSRVTWSLDGSFVGVAFTKHLIHIYAYNGSNELAQRVEIDAHIGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLTGRRLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDGQIKFWDMDNVNPLTSTEADGGLQGLPHLRFNKEGNLLAVTTADNGFKILANAGGLRSLRTVETPAFEALRSPIESAANKVSGSSAVNVGPVSCKVERSSPARPSQILNGVDPAGRNVEKPRTVEDVMDRTKSWQLSEIVDPAHCRLVTMPDSTDTSSKVVRLLYTNSGAGILALGSNGVQKLWKWSRNDQNPSGKATASVVPQHWQPNSGLLMTNDVSGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRISGLAFSTNLGILVSSGADAHLCVWSIDTWEKRKSVPIQLPVGKAPVGETRVQFHSDQLRLLVSHETQLAIYDASKMERIRQWVPQDVLSAPISYAAYSCNSQLIFATFCDGNTGVFDADSLRLRCRIAPSTYFTATTLSGSQAVYPFVVAAHPLEPNQFALGLTDGSVKVIEPNESEGKWGSSPPMDNGMMNGRAASSTSNHTPDQGTQR 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03934 1129 SMART ctlh 34 92 IPR006595 -
Mepo3g03934 1129 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Mepo3g03934 1129 FunFam Topless-related protein 3 731 965 - -
Mepo3g03934 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 593 624 IPR001680 GO:0005515
Mepo3g03934 1129 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 336 439 IPR011044 -
Mepo3g03934 1129 ProSitePatterns Trp-Asp (WD) repeats signature. 470 484 IPR019775 -
Mepo3g03934 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 343 385 IPR001680 GO:0005515
Mepo3g03934 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 484 IPR001680 GO:0005515
Mepo3g03934 1129 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Mepo3g03934 1129 MobiDBLite consensus disorder prediction 1111 1129 - -
Mepo3g03934 1129 Gene3D - 329 394 IPR015943 GO:0005515
Mepo3g03934 1129 Gene3D - 829 1099 IPR015943 GO:0005515
Mepo3g03934 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 912 953 IPR001680 GO:0005515
Mepo3g03934 1129 Pfam WD domain, G-beta repeat 345 375 IPR001680 GO:0005515
Mepo3g03934 1129 Pfam WD domain, G-beta repeat 911 944 IPR001680 GO:0005515
Mepo3g03934 1129 Pfam WD domain, G-beta repeat 449 483 IPR001680 GO:0005515
Mepo3g03934 1129 SUPERFAMILY WD40 repeat-like 768 1089 IPR036322 GO:0005515
Mepo3g03934 1129 SMART Lish 4 36 IPR006594 GO:0005515
Mepo3g03934 1129 Gene3D - 408 672 IPR015943 GO:0005515
Mepo3g03934 1129 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1112 IPR027728 GO:0006355
Mepo3g03934 1129 SMART WD40_4 1050 1091 IPR001680 GO:0005515
Mepo3g03934 1129 SMART WD40_4 442 483 IPR001680 GO:0005515
Mepo3g03934 1129 SMART WD40_4 529 572 IPR001680 GO:0005515
Mepo3g03934 1129 SMART WD40_4 823 859 IPR001680 GO:0005515
Mepo3g03934 1129 SMART WD40_4 905 944 IPR001680 GO:0005515
Mepo3g03934 1129 SMART WD40_4 337 376 IPR001680 GO:0005515
Mepo3g03934 1129 SMART WD40_4 862 902 IPR001680 GO:0005515
Mepo3g03934 1129 SMART WD40_4 401 436 IPR001680 GO:0005515
Mepo3g03934 1129 SMART WD40_4 1000 1036 IPR001680 GO:0005515
Mepo3g03934 1129 SMART WD40_4 485 526 IPR001680 GO:0005515
Mepo3g03934 1129 SMART WD40_4 575 615 IPR001680 GO:0005515
Mepo3g03934 1129 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 912 947 - -
Mepo3g03934 1129 MobiDBLite consensus disorder prediction 1092 1129 - -
Mepo3g03934 1129 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 408 949 IPR011047 -
Mepo3g03934 1129 MobiDBLite consensus disorder prediction 704 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03934 Mepo-Chr3 48800855 48809519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03934 342 559 Miscellaneous Gene Families AT5G08390 27.778 4.26e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03934 - - gmx:100808421 2028.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03934 3 48800855 48809519 Mepo3g03934 3 48800855 48809519 ECH
Mepo3g03934 3 48800855 48809519 Mepo4g03443 4 43861714 43871593 PCT