Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03879 ATGGGGAAAACACGTTTTGCTGTGGCGTTCTGTTTGTTGGCTTTTATATGTTCCCTGCTTCCTTCTTTCTCCTTTGGGATGATGAGGATTGGTTTGCAAAAGAGACCTCTAGATCTTCATAGTATGGATGCTTTTAAAATGGTGAGAGAACAGCAACTAAGATCAGGAAGACCAATGATGCTTGCACATAAGTCCAGCGATGAAGCTATAGTACCTTTGAAGAATTATATGGACGCTCAGTATTTCGGTGAGATCGCAATTGGCACTCCCCCACAGACCTTTACTGTCATATTTGATACCGGTAGTTCCAACCTTTGGGTTCCATCATCCAAGTGTTACTTTTCTATTGCCTGCTACACCCATAATTGGTACAAGGCAAAGAAATCCAAGACATATAACAAAAACGGAACATCTTGTAAAATAAGCTATGGAACCGGATCAATATCTGGTTACTTCAGTCAAGATAATGTTAAAGTTGGCAGTTCTGTTGTCAAGCATCAGGATTTCATTGAGGCTACCCGAGAAGGAAGTCTTTCTTTTCTGGCAGGAAAGTTTGATGGAATATTTGGACTTGGATTTCAAGAGATCTCAGTTGAAAGAGCTTTGCCAGTATGGTACAATATGATGGAACAAAATCTTATCGGCGAGAAGGTGTTCTCTTTTTGGCTCAATGGGAATCCTAATGCGAAAAAGGGTGGTGAATTGGTTTTTGGTGGTGTTGACCCTAAGCATTTCAAAGGAAAACACACTTATGTTCCGGTTACGGAAAAAGGTTACTGGCAGATTGAAATGGGAGATTTTTTCGTCGGAGGCTTGTCAACAGGTGTTTGTGAAGGTGGCTGTGCTGCTATTGTGGACTCAGGAACATCTTTGCTTGCTGGTCCAACTCCTGTTGTGGCTGAAATCAACCATGCTATTGGAGCTGAAGGAGTTCTGAGTGTAGAATGTAAGGAAGTTGTTTCTCAATATGGAGAGTTGATATGGGATCTCCTAGTATCAGGGGTAAAACCTGGTGACGTATGTTCACAAGTTGGTTTATGTTCTATCCGCCGGGATCAATCTAATAGTGCTGGGATTGAGATGGTTACTGAAAAGGAACAGAGTGAGTTGTCAGCAAAAGATACTCCTTTGTGTTCTTCTTGTCAGATGCTTGTTCTTTGGGTCCAGAATCAACTAAAACAAAAGGCAACCAAGGAGAGAGTATTCAACTATGTGAATCAACTGTGTGAGAATCTTCCAAGTCCATCCGGTGAATCAGTGATAAGTTGTAACGATATTTCTAAGATGCCAAACATTTCATTCACTATTGGAAACAAACCCTTCGTCCTCACACCAGAACAGTATATTCTAAGAACCGGAGAAGGCATTACACAGGTCTGCCTTAGTGGGTTTATTGCTTTTGATGTTCCTCCTCCAAAGGGTCCACTCTGGATTCTTGGTGATGTTTTTATGAGGGCATATCACACTGTTTTCGACTACGAAAACCTCCAAGTTGGTTTTGCTGAAGCTGCCTAG 1515 0.4158 MGKTRFAVAFCLLAFICSLLPSFSFGMMRIGLQKRPLDLHSMDAFKMVREQQLRSGRPMMLAHKSSDEAIVPLKNYMDAQYFGEIAIGTPPQTFTVIFDTGSSNLWVPSSKCYFSIACYTHNWYKAKKSKTYNKNGTSCKISYGTGSISGYFSQDNVKVGSSVVKHQDFIEATREGSLSFLAGKFDGIFGLGFQEISVERALPVWYNMMEQNLIGEKVFSFWLNGNPNAKKGGELVFGGVDPKHFKGKHTYVPVTEKGYWQIEMGDFFVGGLSTGVCEGGCAAIVDSGTSLLAGPTPVVAEINHAIGAEGVLSVECKEVVSQYGELIWDLLVSGVKPGDVCSQVGLCSIRRDQSNSAGIEMVTEKEQSELSAKDTPLCSSCQMLVLWVQNQLKQKATKERVFNYVNQLCENLPSPSGESVISCNDISKMPNISFTIGNKPFVLTPEQYILRTGEGITQVCLSGFIAFDVPPPKGPLWILGDVFMRAYHTVFDYENLQVGFAEAA 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03879 504 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 283 294 IPR001969 GO:0004190|GO:0006508
Mepo3g03879 504 Gene3D Acid Proteases 240 504 IPR021109 -
Mepo3g03879 504 FunFam Lysosomal aspartic protease 67 309 - -
Mepo3g03879 504 Pfam Saposin-like type B, region 1 376 413 IPR007856 GO:0006629
Mepo3g03879 504 FunFam Lysosomal aspartic protease 355 503 - -
Mepo3g03879 504 Gene3D - 311 413 - -
Mepo3g03879 504 SUPERFAMILY Acid proteases 15 503 IPR021109 -
Mepo3g03879 504 CDD phytepsin 71 502 IPR033869 GO:0004190
Mepo3g03879 504 ProSiteProfiles Saposin B type domain profile. 311 351 IPR008139 -
Mepo3g03879 504 ProSiteProfiles Peptidase family A1 domain profile. 81 501 IPR033121 -
Mepo3g03879 504 SUPERFAMILY Saposin 312 413 IPR011001 -
Mepo3g03879 504 Pfam Saposin-like type B, region 2 315 347 IPR008138 -
Mepo3g03879 504 PRINTS Pepsin (A1) aspartic protease family signature 477 492 IPR001461 GO:0004190|GO:0006508
Mepo3g03879 504 PRINTS Pepsin (A1) aspartic protease family signature 233 246 IPR001461 GO:0004190|GO:0006508
Mepo3g03879 504 PRINTS Pepsin (A1) aspartic protease family signature 87 107 IPR001461 GO:0004190|GO:0006508
Mepo3g03879 504 PRINTS Pepsin (A1) aspartic protease family signature 283 294 IPR001461 GO:0004190|GO:0006508
Mepo3g03879 504 Pfam Eukaryotic aspartyl protease 80 503 IPR033121 -
Mepo3g03879 504 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 96 107 IPR001969 GO:0004190|GO:0006508
Mepo3g03879 504 ProSiteProfiles Saposin B type domain profile. 374 415 IPR008139 -
Mepo3g03879 504 SMART sapb_4 275 347 IPR008139 -
Mepo3g03879 504 Gene3D Acid Proteases 28 239 IPR021109 -
Mepo3g03879 504 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 20 502 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03879 Mepo-Chr3 48292328 48296973 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03879 K08245 - gmx:548009 890.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03879 3 48292328 48296973 Mepo3g03879 3 48292328 48296973 ECH
Mepo3g03879 3 48292328 48296973 Mepo4g03508 4 44441555 44446201 PCT