LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo3g03775	ATGTCGCGTCGTAATAGCAATGGTAGATCACCCCTCGTCAATCCACAGCGTCAAATCACTTCCTTCTTCACCAAATCCCCTTCTCCCCTTTCACCTTCCCCTTCTCCCTCTCACTCCAAAACCCTAAAACCAAACCCTAATAACCCCATTCCTAAATCTAACCCTAACCCTAACCCTAGTCCTACCATAACCACACCTTCACCTCTCAATCCCAAAAAACCACACAAACCCCGTCTCGTCGTCGACGCTCCTCCTACAATATCACCTCCCCCTTCGTATTCTCCATTCATTGGTAAACGAATCAAGGTTTATTGGCCTTTAGACGATGCTTGGTACGAAGGTGTTGTCAAATCGTTCGATACCGTTACTTCGAAACATCGAATTCGTTACGATGATGATGAAGAGGAAAGTATTGATCTTTCTAAGGAGAAGATTGAGTGGATTCAGGATTCTTCCTCTAAGAAGCTTAAACGGTTGCGGCGTGGTTCTTCTCCTATTAGGAAGATGGTGATTGAGGAGAATGAGGGAGAAGAAATTCCCAAAGAGGAAAAACAAGAAGAAGAAGATGATGATGATAATGATGATTCGGAAGATGAAGATTGGGGGAAGAATGCTGTATTGGAGAATATTGTGGATGAAGAAGAAGAAGAAGAAGATATGGAATTGGAGGAAGAAAATGAAGTTGCAGAGAGTGCTAAAGGAAAGAGTAGTAATAAGGTTGAGCCGAAAAAGCGGAAACTAGGTGGAGGAACGAAAACGGAGCCGATGAAAAAGAGCAAGAGTGGAAATGAAGTTAACAGGGTTGCTGTTAAGCTCTCACCATTGGCGCCTTTGAATAATTTGGAGGTTAGAAAGACATCTGATGGCGCAGACAATGTTGCAACTGGTGATTCCTTTGAAAGATTTGCGCTCCGCGAAGCTCAGAAGTTTCACTTTCTAGGAAAAGATCGCAGGGATGCCAAACGAAGGCGCCCAGGAGATGAAAATTATGACTCAAGAACTCTCTACTTGCCTCCAGATTTTGTGAGGAATTTGTCAGGTGGCCAGAAACAATGGTGGGAATTCAAGTCAAAACACATGGACAAAGTTTTGTTTTTCAAGATGGGTAAATTTTATGAGCTTTTTGAAATGGATGCACATGTAGGAGCAAAAGAGCTTGAATTGCAGTATATGAGGGGAGAGCAACCTCATTGTGGTTTTCCAGAGAAGAATTTCTCAGTGAATGTAGAGAGACTAGCTAGAAAGGGTTATCGAGTTCTTGTTGTAGAGCAGACTGAAACACCTGAACAGATGGAGCTTCGGCGCAAGGAGAGTGGCTCTAAAGATAAGGTTGTGAGACGGGAAATATGTGCAGTGGTTTCAAAAGGCACATTAATAGATGGGGAGTTTATGTCAACCAATCCTGAAGCTGCGTATTTAATGGCACTGACTGAGTACCGTGAGAACAATCCAAATGAAATGTCAGAGCGCACCTACGGTGTTTGTGTAGTTGATGTCGCTACAAGCAGAGTCATTCTTGGGCAGTTCAACGATGACTCAGAGTGCAGTGCCTTGTGCTCTATCTTGTCTGAGATCAGGCCAGTTGAAATTGTGAAACCTGCTAAACTACTCAGTGCTGAAACAGAAAGGGCACTGCTGAAACACACGAGAAACCCTTTAGTGAATGAGTTAATTCCAAATGTGGAATTCTGGGATGCTGATAAAACTTTGGATCATCTGAAGAGAATTTATGGCCACAATAACAATGTTAGTGCTCAAGATGGCGGGTTAGATTGTCTGCCAGATGTTTTACTGGAGCTGGTGAAAACAGATCATGACAGTAGAAGTGCACTCTCAGCACTTGGTGGTGCTCTCTATTATTTGAAACAGGCTTTCCTAGATGAGCAGTTGCTTAGATTTGCGCAGTTTGAGTTGCTTCCATGTTCTGTTTTCAGTGGTCTTGCTTCAAAACCATACATGGTTCTTGATGCTGTAGCCCTAGAGAATCTTGAGATATTTGAGAATAGCAGAAACGGAGAGTCTTCAGGCACACTCTATGCTCAATTAAACCAATGTGTTACGGCGTTTGGGAAGAGACTGCTGAAGTCATGGCTTGCAAGACCGTTATATCACGTGGAGTCAATAAAGGAACGCCAGGAAGCTGTTGCAGGTTTAAAGGGAGTAAATCTACCTCACACATTAGAATTTCGAAAAGCATTATCAAAGTTACCTGACATGGAGCGGTTGCTGGCACGGGTGCTCTCTTCTAGGGATGCTAGTGGAAGGAATGCTAATAAAGTGGTTCTGTATGAGGATTCATCAAAGAAACAACTGCAAGAGTTTATTTCAGCCATGCGTGGTCTTGAACTTATGGCACAAGCTTGCTTGTCACTCGGTGTCATTTTGAATAATGTCAAATCCAGACAGCTTAGTCATCTTTTAACACCTGGTAAAGGTCTTCCTGATGTAAGCATGGATCTGAATCATTTCAAGGATGCCTTTGATTGGGTGGAAGCCAATAACTCCGGCCGTATAATACCTCATGAAGGAGTTGACAAAGAATATGATTCAGCTTGTAAGGCAGTTAATGAGATTGAGTCCAGTTTGTTAGATCATCTCAAGGAACAAAGGAAATTACTTGGAAGCACATCAATCTCTTATGTTGGTATTGGAAAGGACACATACCTATTGGAAGTGCCTGAAAATTTGTCTCAGAATATTCCTCGGGATTATGAGAGGCGTTCATCCAAAAAAGGCTTCGTTAGGTATTGGACTCCAGATATTAAAATATTTTTGAAAGAGCTCTCTCATGCTGAATCTGAAAGGGATACCTTATTGAAAAGTACATTTCAGAGAATGATAGAGCGTTTTTGTGAACATCACACTCAGTGGAAGCAGTTGGTGTCTGCAACTGCTGAGTTGGATGTTTTGATCAATTTAGCTATTGCCAGTGATTACTATGAAGGACCAACCTGCAGACCAAGTTTTGTTGCGACCTTATGTACAAATGAAGCTCCCTACATCTATGCTAAAAGTCTGGGACACCCCGTTCTTAGGAGTGATACCTTAGGAAAGAGTGCCTTTGTACCTAATGACATAACCATAGGTGGTCCAGACCAGGCCTCCTTTATTCTTCTTACAGGTCCTAACATGGGTGGGAAGTCAACTCTTCTTCGCCAAGTTTGCTTGGCTGTGATTTTGGCCCAGGTAGGGGCTGATGTCCCTTCAGAAAGTTTTGAATTGTCTCCTGTGGACCGAATTTTTGTTCGGATGGGTGCCAGAGATAATATCATGGCTGGCCAAAGTACATTTTTAACCGAGCTTTCAGAAACTGCAACAATGCTGTCATCAGCCACTCGTAATTCATTGGTGGCTCTGGATGAGCTTGGGCGTGGGACCTCAACGTCTGATGGACAAGCCATTGCGGAATCAGTATTAGAACATCTTGTACGTAGCGTGCAGTGTCGTGGATTGTTTTCTACACACTATCATCGTTTAGCTATAGATTATCTCAAAGATCCCAAGGTCTGTCTCGCTCACATGGCATGCCAAGTTGGTAGTGGAAATGAAGGTTTGGACGAAGTCACCTTTCTTTACAGGCTGTCCGCTGGTGCTTGCCCCAAGAGCTACGGTGTTAATGTTGCTCGGTTAGCTGGACTACCCACTTCTGTGCTTCAGAAGGCTGATGCCAAGTCCAGAGAATTTGAGGCCACGTATGGTAAATACAGAACTGAACCAAACTCTTCCAATCAAAGTTGGGTTGATGAGATAATAGTCTTGGTACAAAAATTGAACAATGCTGCTAATAATTTGAGTTGCGAGGAGATGGTTTCCGATCACTCTATAGTAAAGCTTCAGCGTGAAGCAAGAGAACTGCTAGAACGATGTTAA	3870	0.4302	MSRRNSNGRSPLVNPQRQITSFFTKSPSPLSPSPSPSHSKTLKPNPNNPIPKSNPNPNPSPTITTPSPLNPKKPHKPRLVVDAPPTISPPPSYSPFIGKRIKVYWPLDDAWYEGVVKSFDTVTSKHRIRYDDDEEESIDLSKEKIEWIQDSSSKKLKRLRRGSSPIRKMVIEENEGEEIPKEEKQEEEDDDDNDDSEDEDWGKNAVLENIVDEEEEEEDMELEEENEVAESAKGKSSNKVEPKKRKLGGGTKTEPMKKSKSGNEVNRVAVKLSPLAPLNNLEVRKTSDGADNVATGDSFERFALREAQKFHFLGKDRRDAKRRRPGDENYDSRTLYLPPDFVRNLSGGQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELELQYMRGEQPHCGFPEKNFSVNVERLARKGYRVLVVEQTETPEQMELRRKESGSKDKVVRREICAVVSKGTLIDGEFMSTNPEAAYLMALTEYRENNPNEMSERTYGVCVVDVATSRVILGQFNDDSECSALCSILSEIRPVEIVKPAKLLSAETERALLKHTRNPLVNELIPNVEFWDADKTLDHLKRIYGHNNNVSAQDGGLDCLPDVLLELVKTDHDSRSALSALGGALYYLKQAFLDEQLLRFAQFELLPCSVFSGLASKPYMVLDAVALENLEIFENSRNGESSGTLYAQLNQCVTAFGKRLLKSWLARPLYHVESIKERQEAVAGLKGVNLPHTLEFRKALSKLPDMERLLARVLSSRDASGRNANKVVLYEDSSKKQLQEFISAMRGLELMAQACLSLGVILNNVKSRQLSHLLTPGKGLPDVSMDLNHFKDAFDWVEANNSGRIIPHEGVDKEYDSACKAVNEIESSLLDHLKEQRKLLGSTSISYVGIGKDTYLLEVPENLSQNIPRDYERRSSKKGFVRYWTPDIKIFLKELSHAESERDTLLKSTFQRMIERFCEHHTQWKQLVSATAELDVLINLAIASDYYEGPTCRPSFVATLCTNEAPYIYAKSLGHPVLRSDTLGKSAFVPNDITIGGPDQASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPSESFELSPVDRIFVRMGARDNIMAGQSTFLTELSETATMLSSATRNSLVALDELGRGTSTSDGQAIAESVLEHLVRSVQCRGLFSTHYHRLAIDYLKDPKVCLAHMACQVGSGNEGLDEVTFLYRLSAGACPKSYGVNVARLAGLPTSVLQKADAKSREFEATYGKYRTEPNSSNQSWVDEIIVLVQKLNNAANNLSCEEMVSDHSIVKLQREARELLERC	1289

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Mepo3g03775	1289	Gene3D	MutS, connector domain	470	650	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Mepo3g03775	1289	PIRSF	Msh6	2	1279	IPR017261	GO:0006298\|GO:0030983
Mepo3g03775	1289	MobiDBLite	consensus disorder prediction	227	261	-	-
Mepo3g03775	1289	MobiDBLite	consensus disorder prediction	210	226	-	-
Mepo3g03775	1289	Gene3D	-	653	974	-	-
Mepo3g03775	1289	Pfam	MutS domain V	1038	1228	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Mepo3g03775	1289	Gene3D	-	819	950	-	-
Mepo3g03775	1289	MobiDBLite	consensus disorder prediction	1	93	-	-
Mepo3g03775	1289	FunFam	DNA mismatch repair protein	819	950	-	-
Mepo3g03775	1289	MobiDBLite	consensus disorder prediction	179	199	-	-
Mepo3g03775	1289	Coils	Coil	1275	1289	-	-
Mepo3g03775	1289	MobiDBLite	consensus disorder prediction	48	73	-	-
Mepo3g03775	1289	SUPERFAMILY	DNA repair protein MutS, domain II	466	668	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Mepo3g03775	1289	Pfam	MutS domain III	659	974	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Mepo3g03775	1289	MobiDBLite	consensus disorder prediction	151	265	-	-
Mepo3g03775	1289	Coils	Coil	203	232	-	-
Mepo3g03775	1289	Gene3D	-	95	146	-	-
Mepo3g03775	1289	MobiDBLite	consensus disorder prediction	1	28	-	-
Mepo3g03775	1289	Pfam	MutS domain II	472	625	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Mepo3g03775	1289	Gene3D	-	985	1265	IPR027417	-
Mepo3g03775	1289	Pfam	MutS domain I	348	461	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Mepo3g03775	1289	SUPERFAMILY	DNA repair protein MutS, domain I	334	457	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Mepo3g03775	1289	FunFam	DNA mismatch repair protein	985	1260	-	-
Mepo3g03775	1289	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	349	1236	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Mepo3g03775	1289	SMART	mutATP5	1034	1226	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Mepo3g03775	1289	Gene3D	DNA repair protein MutS, domain I	304	465	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Mepo3g03775	1289	Pfam	MutS family domain IV	843	934	IPR007861	GO:0005524\|GO:0006298\|GO:0030983
Mepo3g03775	1289	SMART	DNAend	673	1014	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Mepo3g03775	1289	FunFam	DNA mismatch repair protein	303	466	-	-
Mepo3g03775	1289	SUPERFAMILY	DNA repair protein MutS, domain III	656	980	IPR036187	-
Mepo3g03775	1289	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	997	1229	IPR027417	-
Mepo3g03775	1289	CDD	Tudor_Agenet_AtEML-like	97	147	-	-
Mepo3g03775	1289	SMART	TUDOR_7	93	151	IPR002999	-
Mepo3g03775	1289	SUPERFAMILY	Tudor/PWWP/MBT	95	138	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo3g03775	Mepo-Chr3	47241521	47249560	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo3g03775	K08737		-	gmx:100811104	1909.03

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mepo3g03775	3	47241521	47249560	Mepo3g03775	3	47241521	47249560	ECH