Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03706 ATGGTGGCAATGGCCATGGTTGCAGCGCAACAATTCCTATGCTTCTCAAAATCAAATTGTAGAATCACAACAACAAGACCATGCATTCCTCTTCCTCATTTCAGCTCAATTCTTCTACGCTCACGCAATAACAAGAAGATTCAGTTTCCACTCATTTCATGCTCTTCTTCTTCATCACAGACACCAGAAACTGAAACTCAAACTGCTGAATCTTGTGTCAATTTGGGTCTTGAGCTATTTTCCAAAGGAAGGGTTAAAGATGCTTTAGCCCAGTTTGAAACAGCACTTTCTTTGAATCCGAATCCGGTTGAGGCACAAGCTGCGTTCTATAACAAAGCTTGCTGTCATGCATACAGAGGAGAAGGAAAGAAAGCTGCTGATTGTCTCCGCACTGCTTTGAGGGAATATAATCTAAAATTTGGTACAATTCTCAATGATCCAGATTTGGCCTCCTTCAGAGCTTTGCCTGAATTCAAAGAACTGCAAGAAGAGGCGAGGTTGGGCGGGGAAGATGTTGGCTCCAGTTTTCGAAGAGATCTAAAACTTATCAGTGAAGTTCAAGCACCATTTCGTGGGATTAGAAGATTCTTTTACGTAGCATTTACAGCAGCTGCAGGAATATCGTTGTTTTTTAATGTACCGAGGATATTGCGTGCAATTCAAGGGGGTGACGGTGCTCCTGATATCTTGGAAACTGCTGGCAATGCTGCCGTTAACATTGGAGGTATTGTTGTTTTTGTGGCATTATTCCTTTGGGACAATAAAAAAGAGGAGGAGCAGATTGCACAAATATCCCGAAATGAGACACTATCAAGATTGCCTTTGCGCCTGTCAACTAATCGCGTAGTTGAACTCGTGCAGCTAAGGGACACAGTTAGGCCGGTTATAATAGCTGGGAAAAAAGAAACAGTGACTTTGGCTTTGCGCAAGGCAGAGAGATTTCGCACTGATCTCCTTAGACGTGGTGTTTTGTTAGTTCCGGTCATCTGGGGAGAAGGTAGAGAAACCAAAATTGAAAAGAAAGGTTTTGGCCTTCAACCAAAGGGTGCTGAGGCTCTTCCGTCTATTGGGGAAGATTTTGAGAAGCGAACACAGTCCGTAACTGCACAATCAAAACTGAAAGCTGAAGTTAGGTTCAAGGCTGAGGCTGTCTCGCCAGCAGAATGGGAACGGTGGATAAGAGATCAACAGAAGTCTGAAGGAGTTCCAGTTGGGGAAGACGTGTACATAATACTGCGCCTAGATGGGCGAGTTCGAAGATCAGGGAGAGGTATACCTGACTGGGACCAAATTGCAAAGGAGCTTCCGCCAATGGAAGCAATTTTAAGCAAGCTGGAAAGATGA 1344 0.4405 MVAMAMVAAQQFLCFSKSNCRITTTRPCIPLPHFSSILLRSRNNKKIQFPLISCSSSSSQTPETETQTAESCVNLGLELFSKGRVKDALAQFETALSLNPNPVEAQAAFYNKACCHAYRGEGKKAADCLRTALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDVGSSFRRDLKLISEVQAPFRGIRRFFYVAFTAAAGISLFFNVPRILRAIQGGDGAPDILETAGNAAVNIGGIVVFVALFLWDNKKEEEQIAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVIIAGKKETVTLALRKAERFRTDLLRRGVLLVPVIWGEGRETKIEKKGFGLQPKGAEALPSIGEDFEKRTQSVTAQSKLKAEVRFKAEAVSPAEWERWIRDQQKSEGVPVGEDVYIILRLDGRVRRSGRGIPDWDQIAKELPPMEAILSKLER 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03706 447 Pfam Low psii accumulation1 / Rep27 177 254 IPR021883 -
Mepo3g03706 447 SMART tpr_5 69 102 IPR019734 GO:0005515
Mepo3g03706 447 SMART tpr_5 106 139 IPR019734 GO:0005515
Mepo3g03706 447 FunFam Protein LOW PSII ACCUMULATION 1, chloroplastic 56 162 - -
Mepo3g03706 447 Gene3D Tetratricopeptide repeat domain 53 155 IPR011990 GO:0005515
Mepo3g03706 447 Pfam Tetratricopeptide repeat 69 101 IPR013105 -
Mepo3g03706 447 ProSiteProfiles TPR repeat profile. 69 102 IPR019734 GO:0005515
Mepo3g03706 447 SUPERFAMILY TPR-like 65 135 IPR011990 GO:0005515
Mepo3g03706 447 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 4 445 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03706 - - gmx:100784188 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03706 3 46718516 46723643 Mepo3g03706 3 46718516 46723643 ECH