Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03620 ATGGATTCAGGTTCGTGGAGTTCTTCTTCAAAGACCAAAATCAGAACGCCTTTCCCAGAACGCTTTCTCCACAGAAAGAATTCTTCTCAAGATAACTTGGATAGGTTCATACCGAACCGGTCAGCGATGGATTTTGATTACGCTCACTACATGATGATGGAGGGTTGTAGAAAGGGAAAAGAAAATCCAGCGTTGATGTCACCATCTCGTTCAGCCTACCAGAAGCGACTTGCTGAAGCCTGCAACATGCATGACAGAACCAGAATCTTGGCCTTCAAGAACAAGCCTCCAACACCAGTCGAGCTCTTCCCTAAGGAACTTCTGTCCCCTCCACCTCTATCCAAATCCGCTAAGCCTAAACGATGCATTCCTCAGACTTCTGAGAGGACCTTGGACGCACCTGATATCTTAGATGACTTTTACTTGAATTTGCTAGACTGGGGTAGCAGCAATGTTGTTAGTATTGCCCTTGAAAATACCGTTTATCTTTGGAATGCTTCAGATTCCTCTACTTCAGAGCTTGTCACTGTAGATGATGATGATGGTCCTGTCACAAGTGTTAGCTGGGCCCCCGATGGTCGACATTTAGCCATTGGGTTGAACAACTCCCATGTCCAGCTCTGGGATACCACTGCTAGTAAACAGCTAAGGGCAATGAAGGGTGGACACAGAGCAAGAGTGGGTTCACTGTCTTGGAACAATCATATTCTGACAACAGGAGGAATGGATGGTAAAGTTGTAAACAATGATGTTAGAGTGAGATCTCACATCGTTGAAACATACAGGGGACACAACCAGGAGGTTTGTGGGCTCAAGTGGTCACCCTCAGGACAACAATTGGCAAGTGGTGGAAACGATAATGTTGTTCACATATGGGATAGATCTGTGGTTTCTTCAAATTCACCTACCCGATGGCTTCACAGGTTTGAGGAACACATAGCTGCTGTGAAGGCACTGGCTTGGTGTCCCTTTCAGGGTAATCTACTGGCTTCTGGTGGAGGTGATCATTGCATTAAGCTGTGGAACACACATACTGGTGCGAGATTGAGTTCTGTTGACACTGGATCACAAGTATGTGCTCTGCTATGGAACCAGAACGAGCGTGAGCTACTTAGCTCACATGGTTTCACCGAGAACCAGCTTACCCTTTGGAAGTATCCTTCTATGGTGAAAATGGCAGATCTCAACGGTCACACTTCGAGAGTGCTGTATATGGCGCAGAGTCCAGATGGGTGTACAGTGGCATCTGCGGCTGCAGATGAAACTCTTAGATTTTGGAATGTCTTTGGGAGCCCAGCAGAAGCATGCAAAGCCGCACCAAAGACATATAATGAGCCCTTTGCTAATTTCACCCGTATTCGTTGA 1365 0.4645 MDSGSWSSSSKTKIRTPFPERFLHRKNSSQDNLDRFIPNRSAMDFDYAHYMMMEGCRKGKENPALMSPSRSAYQKRLAEACNMHDRTRILAFKNKPPTPVELFPKELLSPPPLSKSAKPKRCIPQTSERTLDAPDILDDFYLNLLDWGSSNVVSIALENTVYLWNASDSSTSELVTVDDDDGPVTSVSWAPDGRHLAIGLNNSHVQLWDTTASKQLRAMKGGHRARVGSLSWNNHILTTGGMDGKVVNNDVRVRSHIVETYRGHNQEVCGLKWSPSGQQLASGGNDNVVHIWDRSVVSSNSPTRWLHRFEEHIAAVKALAWCPFQGNLLASGGGDHCIKLWNTHTGARLSSVDTGSQVCALLWNQNERELLSSHGFTENQLTLWKYPSMVKMADLNGHTSRVLYMAQSPDGCTVASAAADETLRFWNVFGSPAEACKAAPKTYNEPFANFTRIR 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03620 454 SMART WD40_4 170 209 IPR001680 GO:0005515
Mepo3g03620 454 SMART WD40_4 302 342 IPR001680 GO:0005515
Mepo3g03620 454 SMART WD40_4 212 250 IPR001680 GO:0005515
Mepo3g03620 454 SMART WD40_4 388 427 IPR001680 GO:0005515
Mepo3g03620 454 SMART WD40_4 254 293 IPR001680 GO:0005515
Mepo3g03620 454 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 27 436 IPR033010 GO:0010997|GO:0097027|GO:1904668
Mepo3g03620 454 ProSitePatterns Trp-Asp (WD) repeats signature. 329 343 IPR019775 -
Mepo3g03620 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 177 209 - -
Mepo3g03620 454 ProSitePatterns Trp-Asp (WD) repeats signature. 414 428 IPR019775 -
Mepo3g03620 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 293 - -
Mepo3g03620 454 CDD WD40 149 427 - -
Mepo3g03620 454 Pfam WD domain, G-beta repeat 258 293 IPR001680 GO:0005515
Mepo3g03620 454 Pfam WD domain, G-beta repeat 394 427 IPR001680 GO:0005515
Mepo3g03620 454 Pfam WD domain, G-beta repeat 306 342 IPR001680 GO:0005515
Mepo3g03620 454 Pfam Anaphase-promoting complex subunit 4 WD40 domain 176 234 IPR024977 -
Mepo3g03620 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 218 IPR001680 GO:0005515
Mepo3g03620 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 395 428 - -
Mepo3g03620 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 309 346 - -
Mepo3g03620 454 Gene3D - 86 430 IPR015943 GO:0005515
Mepo3g03620 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 293 IPR001680 GO:0005515
Mepo3g03620 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 309 351 IPR001680 GO:0005515
Mepo3g03620 454 PRINTS G protein beta WD-40 repeat signature 414 428 IPR020472 -
Mepo3g03620 454 PRINTS G protein beta WD-40 repeat signature 329 343 IPR020472 -
Mepo3g03620 454 PRINTS G protein beta WD-40 repeat signature 280 294 IPR020472 -
Mepo3g03620 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 395 428 IPR001680 GO:0005515
Mepo3g03620 454 SUPERFAMILY WD40 repeat-like 138 428 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03620 Mepo-Chr3 45940292 45944225 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03620 194 428 Miscellaneous Gene Families AT5G08390 20.253 7.25e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03620 K03363 - gmx:100801495 716.457