Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03550 ATGGCTTCAATTGGCAAAAGGCTTGAAGGTAAAGTAGCAATAATCACGGGAGGTGCTAGTGGAATTGGTGCTGCTACCGCTAAACTATTTGTTCAACATGATGCTAAAGTTGTCATTGCAGATATCCAAGATGAATTAGGTCAATCCCTTTGCAATGAACTTGGCACAAAGAACATTATATATGTTCACTGCAATGTAACCATTGAATCAGACATCATAAACGTGGTTGATACAGCAGTTTCGAATTATGGTAAGCTTGACATCATGTTTAACAATGCTGGTATCTCTGATGACAAAAATAGAGAAATATTAAATTATGATATAGAAGCTTTCAAAAGGGTATTTGATGTTAATGTTTATGGAGCTTTCTTGGGTGCGAAGCATGCTGCTAGGGTAATGATCCCAAACAAAAAAGGTGTTATTCTTTTTACTGCAAGTGTTGCTACAGCAACTGCTGGTGAATCAACACATGCTTATTCTTCTTCAAAGCATGCATCAGTGGGACTTATGAAGAATTTGTGTGTAGAATTAGGGCAATATGGGATTAAAGTGAATTGTATCTCACCAGGAGCTATTCCTACTCCAATTCTAACCGATGCACTGAATATGAACAAGAGTGAAATGGAGAAAGTTTTGTCCTCAGTTGGTGTGTTGAAAGAGGCTATTCTTGAAGTTGAGGATATAGCTGAGGCAGCACTTTATTTGAGCAGTGATGCTTCAAAGTTTGTGAATGGAGTCAACTTAGTTTTGGATGGAGGTTATAGCACCACCAATATGTCATTCACTTCTGCACTCATAAAATGTTTGATGAATGGCACCACCAACCACATTGATCAGTAA 840 0.3786 MASIGKRLEGKVAIITGGASGIGAATAKLFVQHDAKVVIADIQDELGQSLCNELGTKNIIYVHCNVTIESDIINVVDTAVSNYGKLDIMFNNAGISDDKNREILNYDIEAFKRVFDVNVYGAFLGAKHAARVMIPNKKGVILFTASVATATAGESTHAYSSSKHASVGLMKNLCVELGQYGIKVNCISPGAIPTPILTDALNMNKSEMEKVLSSVGVLKEAILEVEDIAEAALYLSSDASKFVNGVNLVLDGGYSTTNMSFTSALIKCLMNGTTNHIDQ 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03550 279 FunFam Short-chain dehydrogenase reductase 1 261 - -
Mepo3g03550 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Mepo3g03550 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 147 IPR002347 -
Mepo3g03550 279 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 IPR002347 -
Mepo3g03550 279 PRINTS Glucose/ribitol dehydrogenase family signature 180 197 IPR002347 -
Mepo3g03550 279 PRINTS Glucose/ribitol dehydrogenase family signature 218 238 IPR002347 -
Mepo3g03550 279 PRINTS Glucose/ribitol dehydrogenase family signature 133 149 IPR002347 -
Mepo3g03550 279 PRINTS Glucose/ribitol dehydrogenase family signature 159 178 IPR002347 -
Mepo3g03550 279 PRINTS Glucose/ribitol dehydrogenase family signature 12 29 IPR002347 -
Mepo3g03550 279 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Mepo3g03550 279 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 256 IPR036291 -
Mepo3g03550 279 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 6 258 - -
Mepo3g03550 279 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 146 174 IPR020904 GO:0016491
Mepo3g03550 279 CDD secoisolariciresinol-DH_like_SDR_c 7 255 IPR045309 GO:0016616
Mepo3g03550 279 Pfam Enoyl-(Acyl carrier protein) reductase 17 255 - -
Mepo3g03550 279 Gene3D - 2 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03550 Mepo-Chr3 45293867 45294821 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03550 8 265 Acyl Lipid Metabolism Gene Families AT1G63380 28.464 2.54e-21 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03550 - - aprc:113863381 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03550 3 45293867 45294821 Mepo3g03550 3 45293867 45294821 ECH