Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03523 ATGGAAGCAGTTCTAGCGTCCCGCCATTTGTCCACGCCACTCTCTCACCACCGAACCACTACCTTCTCCTCCTCCTCTTCTTCTTCGAGCAAGCTTTGTTCTTCCCTTTCTTACAGAAATTCTTTCGCGAAAGAGATATGGGGTTTTGTTCAGTCGAAGAGCATAACTGTGAGAAGAATGGATATGATTCGTCCAGTTGTGGTCAGGGCTGAAATGTTTGGTCAGTTAACCACTGGTCTTGAATCTGCCTGGAACAAACTCAAAGGAGAAGAGGTTTTGACCAAAGACAATATTGTGGAGCCTATGCGAGATATTAGGAGAGCTCTTTTAGAAGCTGATGTAAGTCTTCCTGTTGTAAGAAGGTTTGTGCAATCTGTTACTGATCAGGCTGTGGGTGTTGGAGTCACTCGAGGAGTCAAACCCGATCAACAATTGGTTAAGATTGTTCATGATGAACTTGTTCAATTGATGGGTGGAGAGGTCTCGGAATTGACTTTTGCCAAATCTGGGCCCACTGTCATTTTATTGGCTGGACTCCAGGGAGTTGGGAAGACAACCGTGTGTGCAAAGTTAGCAAATTATTTCAAGAAACAGGGGAAGAGTTGCATGCTAGTTGCCGGGGATGTTTATAGACCTGCTGCTATTGACCAGCTTACTATCTTGGGTAAACAGGTGGACGTCCCTGTATATACAGCAGGTACCGATGTTAAACCATCAGACATTGCTAAACAAGGTTTTGAAGAGGCCAAAAAGAAGAAAATTGATGTGGTTATTGTTGACACTGCTGGTAGGCTGCAGATAGACAAAGCAATGATGGACGAGTTAAAAGATGTGAAACGGGTACTGAGTCCAACAGAAGTCTTGTTAGTTGTGGATGCTATGACAGGGCAAGAAGCAGCAGCTTTGGTGACTACTTTCAATCTTGAGATTGGAATAACTGGTGCCATCTTGACAAAGCTAGATGGTGATTCAAGAGGTGGAGCAGCTTTGAGTGTCAAAGAGGTATCTGGAAAGCCAATTAAGTTGGTAGGACGCGGGGAACGCATGGAAGATCTTGAACCTTTCTACCCCGACCGAATGGCTGGGCGAATCCTAGGAATGGGAGATGTCCTTTCATTTGTGGAGAAGGCACAAGAAGTTATGCAACAAGAAGATGCTGAGGACCTGCAAAAGAAGATCATGAGTGCAAAGTTTGACTTTAATGATTTTCTAAAGCAAACTCGTGCTGTTGCACAGATGGGTTCTGTGTCCCGAGTCATTGGGATGATTCCTGGTATGGCAAAGGTTACTCCTGCTCAAATTCGAGAAGCAGAGAGGAATTTGGAGATTATGGAAGTGATAATAGAAGCAATGACCCCTGAGGAAAGGGAAAAGCCAGAACTGTTGGCAGAATCCCCTATTAGGAGGAAAAGAGTTGCTCAGGATTCAGGGAAAACAGAGCAGCAGGTAAGCCAACTTGTAGCTCAACTATTTCAAATGCGTGTTCGGATGAAGAACCTAATGGGTGTAATGGAAGGTGGATCAATGCCAACACTTAGTAATCTTGAGGAAGCACTTAAAACAGAGGAAAAGGCTCCACCTGGCACTGCAAGGAGGAGAAAGAAAGCAGAGTCAAGGAAGTTATTTGCGGACTCAACGTCAAGGCAACCTCCTCGTGGATTTGGGAGCAAAAACTGA 1677 0.4478 MEAVLASRHLSTPLSHHRTTTFSSSSSSSSKLCSSLSYRNSFAKEIWGFVQSKSITVRRMDMIRPVVVRAEMFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAVGVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKSGPTVILLAGLQGVGKTTVCAKLANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKKKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLSPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTPAQIREAERNLEIMEVIIEAMTPEEREKPELLAESPIRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSMPTLSNLEEALKTEEKAPPGTARRRKKAESRKLFADSTSRQPPRGFGSKN 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03523 558 MobiDBLite consensus disorder prediction 512 558 - -
Mepo3g03523 558 Gene3D - 75 376 IPR042101 -
Mepo3g03523 558 SMART SRP54_N_2 72 157 IPR013822 GO:0005525|GO:0006614
Mepo3g03523 558 SMART SRP54_3 171 366 IPR000897 GO:0005525|GO:0006614
Mepo3g03523 558 Gene3D - 161 355 IPR027417 -
Mepo3g03523 558 MobiDBLite consensus disorder prediction 12 30 - -
Mepo3g03523 558 SMART AAA_5 170 317 IPR003593 GO:0016887
Mepo3g03523 558 NCBIfam signal recognition particle protein 74 498 IPR004780 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Mepo3g03523 558 Pfam SRP54-type protein, helical bundle domain 76 153 IPR013822 GO:0005525|GO:0006614
Mepo3g03523 558 Pfam Signal peptide binding domain 397 495 IPR004125 GO:0006614|GO:0008312|GO:0048500
Mepo3g03523 558 MobiDBLite consensus disorder prediction 517 542 - -
Mepo3g03523 558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 424 IPR027417 -
Mepo3g03523 558 MobiDBLite consensus disorder prediction 457 479 - -
Mepo3g03523 558 CDD SRP_G 172 364 - -
Mepo3g03523 558 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 72 517 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Mepo3g03523 558 Pfam SRP54-type protein, GTPase domain 171 366 IPR000897 GO:0005525|GO:0006614
Mepo3g03523 558 MobiDBLite consensus disorder prediction 457 476 - -
Mepo3g03523 558 Gene3D - 377 501 IPR036891 GO:0006614|GO:0008312|GO:0048500
Mepo3g03523 558 SUPERFAMILY Signal peptide-binding domain 397 498 IPR036891 GO:0006614|GO:0008312|GO:0048500
Mepo3g03523 558 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 339 352 IPR000897 GO:0005525|GO:0006614
Mepo3g03523 558 FunFam Signal recognition particle 54 kDa subunit 161 355 - -
Mepo3g03523 558 MobiDBLite consensus disorder prediction 1 30 - -
Mepo3g03523 558 Hamap Signal recognition particle 54 kDa protein [srp54]. 76 513 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Mepo3g03523 558 MobiDBLite consensus disorder prediction 543 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03523 Mepo-Chr3 45035574 45043392 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03523 K03106 - gmx:100782581 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03523 3 45035574 45043392 Mepo3g03523 3 45035574 45043392 ECH