Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03448 ATGGCGGAGCATTTAGCATCGATATTCGGAACAGAGAAAGACAGAGTTAACTGTCCATTCTACTTCAAGATCGGAGCTTGTAGACATGGTGACCGTTGTTCTCGTCTTCATACCAAACCCACCATTAGTCCTACTCTTGTTCTCTCTAATATGTATCAACGTCCTGATATGAACCTTAACTTTATCAATCCTACTCCTAATCAACCTCAGCCTCCTCAACCACCTCAACCTGAATCTCTTGACCCTGATAAACTCCAAGAACACTTCGATGATTTTTATGAAGATCTATTTGAGGAGCTGAGCAAGTATGGTCAGATTCAGAGCTTGAATATTTGTGACAATTTGGCTGATCATATGGTTGGCAATGTATATGTTCAGTATAAAGAGGAAGACCATGCTGCTAATGCTCTTATGAATCTCACTGGAAGATTTTATTCAGGCCGACCAATCATTGTTGACTTCTCTCCTGTTACGGATTTTCGAGAAGCTACTTGTAGGCAGTACGAAGAGAATGTATGCAATCGAGGTGGCTACTGCAACTTTATGCATCTAAAGAAGATTAGCAGAGATTTGAGGAAGCGATTATTTGGAAGAAGTAGTAGGCGTTGGAATGACCGTAGTGGAAGCAGAAGCCGGAGCCCCCCGAGGAATCGTAACTATGAGGGGCGTTCATATTCTGGCCGTGGTTCTGGTAGAAGGGATTTGGACAGGTCTCATGGCTCCCATGGTAGAAGGCCAAGAAGCCGTAGTCCTCGGCATAGAGGAAGGCGGAGTAGAAGTCCGGTGGGCAGAGACAGGAGTCCAAATCCGATCAGAGGAGAAAGAGAAAGTAGTGTAGAAAGGAGAGCTAGAATAGAACAATGGAACAGGGAGAAGGAAGTTGGAGATTCTGGTAACAAGGACAATAAGAGTAACAATGATTATGAAGAGGCGGGCTTAAAAAATGGCAGTGATTCTGGCAATCATCAGATATAG 975 0.4379 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLNFINPTPNQPQPPQPPQPESLDPDKLQEHFDDFYEDLFEELSKYGQIQSLNICDNLADHMVGNVYVQYKEEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRDLRKRLFGRSSRRWNDRSGSRSRSPPRNRNYEGRSYSGRGSGRRDLDRSHGSHGRRPRSRSPRHRGRRSRSPVGRDRSPNPIRGERESSVERRARIEQWNREKEVGDSGNKDNKSNNDYEEAGLKNGSDSGNHQI 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03448 324 ProSiteProfiles Zinc finger C3H1-type profile. 159 186 IPR000571 GO:0046872
Mepo3g03448 324 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 150 IPR000504 GO:0003723
Mepo3g03448 324 SMART rrm2_1 78 153 IPR003954 GO:0003676
Mepo3g03448 324 MobiDBLite consensus disorder prediction 65 79 - -
Mepo3g03448 324 MobiDBLite consensus disorder prediction 309 324 - -
Mepo3g03448 324 SUPERFAMILY RNA-binding domain, RBD 88 160 IPR035979 GO:0003676
Mepo3g03448 324 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
Mepo3g03448 324 MobiDBLite consensus disorder prediction 58 84 - -
Mepo3g03448 324 MobiDBLite consensus disorder prediction 268 308 - -
Mepo3g03448 324 CDD RRM_U2AF35B 44 156 - -
Mepo3g03448 324 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 161 184 IPR000571 GO:0046872
Mepo3g03448 324 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 37 IPR000571 GO:0046872
Mepo3g03448 324 Gene3D - 37 174 IPR012677 -
Mepo3g03448 324 MobiDBLite consensus disorder prediction 201 324 - -
Mepo3g03448 324 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mepo3g03448 324 PRINTS U2 auxiliary factor small subunit signature 141 165 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mepo3g03448 324 PRINTS U2 auxiliary factor small subunit signature 176 188 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mepo3g03448 324 PRINTS U2 auxiliary factor small subunit signature 86 101 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mepo3g03448 324 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mepo3g03448 324 PRINTS U2 auxiliary factor small subunit signature 114 136 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mepo3g03448 324 MobiDBLite consensus disorder prediction 242 260 - -
Mepo3g03448 324 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 288 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mepo3g03448 324 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 157 IPR000504 GO:0003723
Mepo3g03448 324 MobiDBLite consensus disorder prediction 227 241 - -
Mepo3g03448 324 FunFam Splicing factor U2AF small subunit 45 156 - -
Mepo3g03448 324 SMART c3hfinal6 13 39 IPR000571 GO:0046872
Mepo3g03448 324 SMART c3hfinal6 159 185 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03448 Mepo-Chr3 44422649 44425505 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03448 K12836 - gmx:100783847 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03448 3 44422649 44425505 Mepo3g03448 3 44422649 44425505 ECH