Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03233 ATGGTGGGTGTAATATCGTTGATAACAGGGATGGCTGGTCCAAGTGGGTTTGGATCAGCTTCAACTGCAGAGCAGGTTACTGAAGGAATTGATGCTAGCAACCTTACCGCAATCATCACAGGAGGAGCAAGTGGTATAGGATTGGAGACAACAAGAGTGTTGGCTCTTAGAAAGGTCCATGTTATCATTGCTGCAAGAAACATTGAATCTGCCGAGGAAGCCAAAGAACAAATAACACAAGAGAACAAATCTGCACGAGTGGACATAATGAAACTTGACCTATGCTCAACGAAGTCTGTCCGATCATTCGTGGACAACTTCATTGCTCTTGATCTTCCTCTCAACATCTTAATAAACAATGCTGGAATAATGTTCTGCCCCTTCAAGCTCTCAGAGGAGGGAATTGAGATGCAATTTGCAACAAACCATCTTGGCCATTTCCTCCTGACAAATCTTCTTCTTGACAAAATGAAACAAACTGCAAAGACAACTGGAATAGAGGGGAGGATCATAAATCTATCATCAATTGCACATAGATACACTTACTGCAGAAAGGGGATTAGATTTGAGAAGATCAATGATAAAAAAGGTTATTCAAGCAAGAAGGCCTATGGACAGTCCAAGTTAGCCAACATATTACATGCAAATGAACTCTCTCGTCGCCTTCAGGAAGAGGGAGTGAACATCACAGCCAACTCTGTCCACCCAGGAGTGATAATGACTCCTCTTATGAGATATTCTTCTTACACAATGCACTTGTTGAAGATCTTCAGCTTTTACATATGGAAGAACGTCCCACAGGGAGCTGCCACGACATGTTATGTTGCACTCCACCCAAGTGTGAAAGGTGTAACTGGGAAGTACTTTGTGGATTGCAATGAATTCAAGCCAAGTGCATATGCAAAAAATAAACAATTAGCAAAGAAACTTTGGGATTTCAGCAACAAGTTGATCAATTCAATTTCAAAAGCTTGA 975 0.4133 MVGVISLITGMAGPSGFGSASTAEQVTEGIDASNLTAIITGGASGIGLETTRVLALRKVHVIIAARNIESAEEAKEQITQENKSARVDIMKLDLCSTKSVRSFVDNFIALDLPLNILINNAGIMFCPFKLSEEGIEMQFATNHLGHFLLTNLLLDKMKQTAKTTGIEGRIINLSSIAHRYTYCRKGIRFEKINDKKGYSSKKAYGQSKLANILHANELSRRLQEEGVNITANSVHPGVIMTPLMRYSSYTMHLLKIFSFYIWKNVPQGAATTCYVALHPSVKGVTGKYFVDCNEFKPSAYAKNKQLAKKLWDFSNKLINSISKA 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03233 324 Gene3D - 25 321 - -
Mepo3g03233 324 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Mepo3g03233 324 PRINTS Glucose/ribitol dehydrogenase family signature 227 244 IPR002347 -
Mepo3g03233 324 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Mepo3g03233 324 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Mepo3g03233 324 CDD retinol-DH_like_SDR_c_like 36 311 - -
Mepo3g03233 324 PANTHER RETINOL DEHYDROGENASE 14 318 - -
Mepo3g03233 324 Coils Coil 61 88 - -
Mepo3g03233 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Mepo3g03233 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Mepo3g03233 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 204 223 IPR002347 -
Mepo3g03233 324 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 297 IPR036291 -
Mepo3g03233 324 Pfam short chain dehydrogenase 36 181 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03233 Mepo-Chr3 42505105 42511244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03233 17 297 Acyl Lipid Metabolism Gene Families AT3G46170 24.232 1.04e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03233 K11153 - gmx:100801849 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03233 3 42505105 42511244 Mepo3g03233 3 42505105 42511244 ECH
Mepo3g03233 3 42505105 42511244 Mepo4g02685 4 35547020 35550735 PCT