Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03046 ATGGACGAAGAAGTTGCAGCGTCAGAAACCAGAAAAGAAACCACCGAAGTAGCACCGGCACTCATCGCCGTTCAGCCTGACGGCCACCACATCGCCGTCGCTGTCGGACCGGACCTCCGCGTCTTCAACCTCCTTTCCAATTCTGCAGCTTCCTTGCTCGATGAATCCGTTAACCAACCTTTTCATAAAGATAATATTCGTGCAATTCGATTTGGTGCAAAAGGAAAACTGTTTGTCTCCGCTGGTGATGATAAAACCCTAAAAATTTGGTCACCGGAAAATTGGAAGTGTATTTCCACGGTTTTGTCGGAGAAGAGAGTTACTGCCGTTGCTATAAGCAATGATGGATTGTACGTCTGTTTTGCTGATAAATTTGGACTTGTTTGGGTTGTGGATCTCCATGAAAATTCGAGTGATAAGAAGCCGATACCGCTTCTTTCTCATTATTGCAGTATAATCACTAGCTTGGAATTTTCGCCTGATAATCGGTATATTTTGAGTGCTGATAGAGATTTTAAAATTCGTGTTACTAATTTTCCTAAGAATCCGTTAAATGGAGCTCACGAGATACAGAGTTTTTGTCTTGGTCATACGGAGTTTGTTTCTTGCCTTGCTTTCGTTCCAGCTCAGGAAAACCCTCATAGTCTTCTTCTATCTGGCAGTGGTGATTCCACAGTACGATTGTGGGATATCACCTCGGGTGCACTCCTAGATACTTGTGAGGTTGCAGTTAAGGCAGGGCTTTTAGAGTCCAATGGTAATGCAGAGGAGCATGACCATGCGGTTACTGATTTATGTACCACCCTGGATGGTTTGCTTGTTGCCGTGGCCATTCAGAGCTTGCAAGGAATTGTATTGTTAAGTTGCAACGTTTCTGCACAAACACTTTCCGTTGCCAAGGTTGTTTCTATTGCAGGAGAGACTTTTGTCCCTACCTGCCTGGCAAACAACCCCTCTACAAGGGAACTGTGGATGGTTACAGGTGTCTCTAGTTTACCTGGATATGATTACCCCTCTTTGTCTCGTGTCCTAGTAATTTCTGGTATTGATGTTGAGCAAGAGCCAGTTGTTCTGGGAGACGATAAGATACCTGGAGGCATAAAGCTGCTAGAAACGTTACAAGGAACTGCATCTTTTGATGACAATGCTTTTTTGGTAGCAGCTGAAGCTGTCAAAGCAGCAATGTGTAACCTATTAATAAAGAAGCAATACCCTTTCGAGAATAGAGAATATAGAAAGAAAACTAGAAATGATAGAAAACTCAAGGAATAA 1272 0.4316 MDEEVAASETRKETTEVAPALIAVQPDGHHIAVAVGPDLRVFNLLSNSAASLLDESVNQPFHKDNIRAIRFGAKGKLFVSAGDDKTLKIWSPENWKCISTVLSEKRVTAVAISNDGLYVCFADKFGLVWVVDLHENSSDKKPIPLLSHYCSIITSLEFSPDNRYILSADRDFKIRVTNFPKNPLNGAHEIQSFCLGHTEFVSCLAFVPAQENPHSLLLSGSGDSTVRLWDITSGALLDTCEVAVKAGLLESNGNAEEHDHAVTDLCTTLDGLLVAVAIQSLQGIVLLSCNVSAQTLSVAKVVSIAGETFVPTCLANNPSTRELWMVTGVSSLPGYDYPSLSRVLVISGIDVEQEPVVLGDDKIPGGIKLLETLQGTASFDDNAFLVAAEAVKAAMCNLLIKKQYPFENREYRKKTRNDRKLKE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03046 423 ProSitePatterns Trp-Asp (WD) repeats signature. 217 231 IPR019775 -
Mepo3g03046 423 Gene3D - 105 359 IPR015943 GO:0005515
Mepo3g03046 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 194 234 - -
Mepo3g03046 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 239 IPR001680 GO:0005515
Mepo3g03046 423 SUPERFAMILY WD40 repeat-like 21 348 IPR036322 GO:0005515
Mepo3g03046 423 PANTHER WD40 REPEAT PROTEIN 4 17 415 IPR028884 GO:0036265
Mepo3g03046 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Mepo3g03046 423 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 28 415 IPR028884 GO:0036265
Mepo3g03046 423 FunFam tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit 105 357 - -
Mepo3g03046 423 SMART WD40_4 186 230 IPR001680 GO:0005515
Mepo3g03046 423 SMART WD40_4 94 130 IPR001680 GO:0005515
Mepo3g03046 423 SMART WD40_4 53 91 IPR001680 GO:0005515
Mepo3g03046 423 SMART WD40_4 139 178 IPR001680 GO:0005515
Mepo3g03046 423 Gene3D - 18 104 IPR015943 GO:0005515
Mepo3g03046 423 Pfam WD domain, G-beta repeat 147 176 IPR001680 GO:0005515
Mepo3g03046 423 Pfam WD domain, G-beta repeat 194 230 IPR001680 GO:0005515
Mepo3g03046 423 Pfam WD domain, G-beta repeat 62 91 IPR001680 GO:0005515
Mepo3g03046 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03046 Mepo-Chr3 40563494 40567473 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03046 62 237 Miscellaneous Gene Families AT5G08390 26.519 1.57e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03046 K15443 - gmx:100786310 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03046 3 40563494 40567473 Mepo3g03046 3 40563494 40567473 ECH