Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03003 ATGCTGAAGTGTTATTCTATGATGTTGTCTCTTCCAAACATGAAAGCAGCAGCGTGTGGTGGTATTTTGGGGCTTCCAATAGAGTTTTGTATTCTGCTTTCGGTGCAAACCTTGGGTAATTTGATTTTTGCTTTTTCTATGAAGTTGTTCTTCTCGTACTTCAAAGATTTGGTGGGAAGAGAAGTGACGGTTGAACTGAAGAACGATTTAGCCATCAGAGGAACCTTGCATTCTGTTGACCAATACCTCAACATCAAACTCGAAAACACTCGCGTTGTTGATCAAGACAGATACCCTCACATGCTTTCTGTAAGGAACTGCTTCATCAGAGGATCAGTGGTGAGATACGTGCAATTGCCTCCAGAAGGAGTGGACATCGAACTATTGCACGATGCCACAAGGAGAGAAGCCAGGGGTGGTTGA 423 0.435 MLKCYSMMLSLPNMKAAACGGILGLPIEFCILLSVQTLGNLIFAFSMKLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDRYPHMLSVRNCFIRGSVVRYVQLPPEGVDIELLHDATRREARGG 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03003 140 CDD LSm2 49 137 IPR016654 GO:0006397
Mepo3g03003 140 Pfam LSM domain 54 118 IPR001163 -
Mepo3g03003 140 SMART Sm3 52 119 IPR001163 -
Mepo3g03003 140 Gene3D - 39 139 - -
Mepo3g03003 140 ProSiteProfiles Sm domain profile. 49 123 IPR047575 GO:0003723
Mepo3g03003 140 SUPERFAMILY Sm-like ribonucleoproteins 50 139 IPR010920 -
Mepo3g03003 140 PANTHER SNRNP CORE PROTEIN FAMILY MEMBER 49 138 IPR016654 GO:0006397
Mepo3g03003 140 FunFam U6 snRNA-associated Sm-like protein LSm2 48 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03003 Mepo-Chr3 40105653 40110881 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03003 K12621 K10523 sspl:121755081 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03003 3 40105653 40110881 Mepo3g03003 3 40105653 40110881 ECH