Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02870 ATGGCCCTCCTAAGACAATTCCTCCTCTCATTCACTATCGTCATCATTTCATTTGTTGCTTGCAATAGCAACTTGCAAGAGGACCCACTTATTACTACATACGTTGATGATTCACCTTCCTATGATGATGGTGATACATTATTATTCAAGAACTTGGTTGAGCAAAACACAAATGATTTTTCGTTTTTAGACCATGGTGTCACTTCACGTTCACTTAAAATTGTTAATGTCAAAGATTATGGAGCTAAAGGAGATGGTCATACTGATGACACACAGGCATTCAAGAAGGCTTGGGAAGTAGTATGTTCTTCAGGGCAAGCAGTTTTAGTGGCACCTCAAGATTATAATTATCTACTCAAACCAATCAGATTCTCCGGTCCTTGCAAATCTAACATATCAGTTCATATATCTGGAAGTCTTGAAGCATCAGATAATCCATCAGATTACAGTGAAGATCAAAGACATTGGCTTGTATTTGTGGAAGTTCAGCAACTATTAGTTAATGGTGGTGGAACCATCGATGGAAAAGGAAACATATGGTGGCAAAACTCATGCAAAAGGAACAAAAAGAAACCTTGCAAGGATGCTCCAACGGCTCTAACATTTGATAGCTGCAAGGACTTAATAGTTGAAAATTTGACAATACAAAATGCGCAACAAATCCACGTTTCATTCCAGGATTCGATTAATGTTAAAGCTTCTGGTCTCAATGTGTCATCACCAGGGAATAGTCCTAACACCGATGGAATTCATATCACCAATACCCAAAACATCAAAATCTCTAGCTCTATCATAGGAACTGGTGACGATTGTATATCAATTGTTGATGGATCTAGTAATGTAGAAGCCACAGACATTACTTGTGGACCAGGCCATGGCATCAGTATTGGAAGCTTGGGGGCTGGAAAATCTAAGGACATCGTTTCGGGAGTATTAGTGAATGGAGCTAAGATTTCTGGAACTACAAATGGAGTTAGAATTAAGACGTGGCCGGGAGGTTCAGGAAGTGCTAGCAACATCAAGTTTCAGAACATTGAAATGGACAATGTGACCAACCCCATAATAATTAACCAGAATTACTGTGACAAGAAAAAAAAGCCATGTAAAAAAATGGACTCTGCGGTCCAAATCAGCAATGTGTTGTACCAGAATATAACAGGCAAAAGTGCTTCCGATGTAGCTGTAAAGTTTGATTGCAGTGAGAAATTTCCATGCAAGGAGATAAAAATGCAAAACATACTCTTAATATGTGAAGAAGGAGAACCTGCTAAGGCTTTATGCAACAATGTTCAATTGTCTTACACAGGAAATGTTAACCCACGCTGCAACTCACAGAAATATACAAATTAA 1350 0.3852 MALLRQFLLSFTIVIISFVACNSNLQEDPLITTYVDDSPSYDDGDTLLFKNLVEQNTNDFSFLDHGVTSRSLKIVNVKDYGAKGDGHTDDTQAFKKAWEVVCSSGQAVLVAPQDYNYLLKPIRFSGPCKSNISVHISGSLEASDNPSDYSEDQRHWLVFVEVQQLLVNGGGTIDGKGNIWWQNSCKRNKKKPCKDAPTALTFDSCKDLIVENLTIQNAQQIHVSFQDSINVKASGLNVSSPGNSPNTDGIHITNTQNIKISSSIIGTGDDCISIVDGSSNVEATDITCGPGHGISIGSLGAGKSKDIVSGVLVNGAKISGTTNGVRIKTWPGGSGSASNIKFQNIEMDNVTNPIIINQNYCDKKKKPCKKMDSAVQISNVLYQNITGKSASDVAVKFDCSEKFPCKEIKMQNILLICEEGEPAKALCNNVQLSYTGNVNPRCNSQKYTN 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02870 449 SUPERFAMILY Pectin lyase-like 70 444 IPR011050 -
Mepo3g02870 449 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Mepo3g02870 449 PANTHER - 73 430 - -
Mepo3g02870 449 ProSitePatterns Polygalacturonase active site. 285 298 IPR000743 GO:0004650|GO:0005975
Mepo3g02870 449 SMART pbh1 337 358 IPR006626 -
Mepo3g02870 449 SMART pbh1 255 276 IPR006626 -
Mepo3g02870 449 SMART pbh1 308 329 IPR006626 -
Mepo3g02870 449 SMART pbh1 205 254 IPR006626 -
Mepo3g02870 449 Pfam Glycosyl hydrolases family 28 106 431 IPR000743 GO:0004650|GO:0005975
Mepo3g02870 449 Gene3D - 63 448 IPR012334 -
Mepo3g02870 449 FunFam Polygalacturonase QRT2 62 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02870 Mepo-Chr3 38780098 38783616 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02870 65 442 Glycoside Hydrolase AT3G07970 57.330 7.40e-146 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02870 K01184 - gmx:100797601 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g02870 3 38780098 38783616 Mepo3g02870 3 38780098 38783616 ECH