Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02488 ATGGGCACAAGCAGCGATCCAACCCAAGACACTTCCGACGAGCAACAAAAACGCTCCGAAATCTACACTTACGAAGCACCATGGCACATCTACGCTATGAACTGGAGCGTCCGTCGCGACAAAAAATATCGCCTCGCTATCGCTTCTCTCTTAGAACAATACCCTAACCGCGTCGAAATCGTTCAACTTGATGACACCACCGGCGAAATCAAATCCGACCCAAATCTCTCCTTCGAACATCCTTACCCACCTACCAAATCCATCTTCATCCCTGACAAAGACTGCCAACGCCCTGACCTCCTCGCCACCTCCTCCGATTTCCTCCGTATTTGGCGGATCTCCGATTCCGACGAATCAGCGTCGGAGTCTCGTGGCGTCGAACTCAAAAGTCTTCTCAATGGTAATAAAAACAGTGAATATTGTGGCCCAATTACTTCTTTTGATTGGAATGAAGCTGAACCGCGTCGAATCGGTACTTCGAGTATTGACACTACGTGTACGATTTGGGATATTGAGAAAGAAACCGTTGATACGCAGTTAATTGCGCATGATAAAGAGGTTTATGATATAGCTTGGGGTGGTGTTGGTGTTTTTGCTTCGGTTTCTGCTGATGGGTCTGTTAGGGTTTTTGATTTACGTGATAAAGAACATTCTACGATAATTTATGAAAGTTCTGAACCTGATACACCGTTGGTTAGGCTAGGTTGGAATAAACAAGATCCTAGGTATATGGCAACGATTATAATGGATTCTGCTAAGGTTGTTGTGCTGGATATTCGTTTTCCGACGTTACCGGTGGTGGAGTTGCAGAGACATCAAGCTAGTGTGAATGCGATAGCGTGGGCGCCGCATAGTTCGTGTCATATTTGCACTGCTGGTGATGATTCTCAGGCGTTGATTTGGGATCTTTCTTCAATGGGGCAGCCTGTTGAAGGTGGGCTTGATCCTATTTTGGCTTATACTGCTGGTGCTGAGATTGAACAGCTTCAATGGTCTTCTTCTCAGCCTGATTGGGTTGCTATTGCTTTTTCGACTAAGCTTCAGATTCTTAGGGTTTGA 1059 0.458 MGTSSDPTQDTSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDTTGEIKSDPNLSFEHPYPPTKSIFIPDKDCQRPDLLATSSDFLRIWRISDSDESASESRGVELKSLLNGNKNSEYCGPITSFDWNEAEPRRIGTSSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02488 352 ProSitePatterns Trp-Asp (WD) repeats signature. 289 303 IPR019775 -
Mepo3g02488 352 SMART WD40_4 262 302 IPR001680 GO:0005515
Mepo3g02488 352 SMART WD40_4 125 170 IPR001680 GO:0005515
Mepo3g02488 352 SMART WD40_4 173 211 IPR001680 GO:0005515
Mepo3g02488 352 Pfam WD domain, G-beta repeat 269 302 IPR001680 GO:0005515
Mepo3g02488 352 Pfam WD domain, G-beta repeat 180 211 IPR001680 GO:0005515
Mepo3g02488 352 SUPERFAMILY WD40 repeat-like 56 310 IPR036322 GO:0005515
Mepo3g02488 352 PANTHER WD REPEAT CONTAINING PROTEIN 11 352 IPR045159 -
Mepo3g02488 352 Gene3D - 6 351 IPR015943 GO:0005515
Mepo3g02488 352 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 305 IPR001680 GO:0005515
Mepo3g02488 352 FunFam WD repeat-containing protein LWD1 17 351 - -
Mepo3g02488 352 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02488 Mepo-Chr3 34865934 34870487 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02488 K11805 - gmx:100779365 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g02488 3 34865934 34870487 Mepo3g02488 3 34865934 34870487 ECH