Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01275 ATGTCAAGTCATTGGGGTATTATAGTTTCAGATCCATGGCTACAAAACCAGTTTACACAAGTTGAACTTCGCAGCTTAAAATCACAATTCATGATCATGAGGAGAGAGAGTGGGGAGCTTACCATTGCAGACTTGTCTTCAAAGATGTCAAGATTGAAAGTTGTGGGAGAAAATCTTAGTGAAGAAGAGAGAGATTCTTATATCAATGATTTGTATAAGAAATCAGATGAAGATGTTGATTTTGAATTGTTTCTCAAGGTTTACTTGAAACTTCAAACTTTTGCAAGTTCTAGAACAGGAAGCAATAATGCAAAAAACTCGTCAGCATTCCTCAAGGTTGCCACTACAACATTGCTTCACACAATAAGTGAATCCGAGAAGGCATCATATGTTACACATATAAATAATTATCTTGCAGAAGACGAATTCCTAAAGAAATACCTTCCTCTTGATCCTTCAACCAACGATCTCTTTGAAATCGCAAAAGACGGTGTTCTTCTTTGTAAACTTATTAATGTGGCAGTTCCGACAACTATCGATGAACGCGCAATCAATACAAAAAGATTACTTAACCCTTGGGAAAGAAATGAAAATCACACACTTTGCCTCAACTCTGCTAAAGCAATTGGATGTACCGTAGTCAACATTGGCACTCAAGACTTAATTGAAGGAAGGCGTCATTTGGTGCTTGGTCTGATTTCACAGATTATTAAGATACAATTATTGGCAAATCTGAACCTAAAGAAAACTCCTCAACTTTTGGAACTGGTTGGTTGGGATAGTAAGGATATGGAAGAGTTGATGAGTCTACCACCAGAAAAAATCTTGTTGAGATGGATGAATTTCCACTTGAAGAAAACAGAATATAAGAAGATTGTCGCAAATTTCTCCTCCGATGTTAAGGATGCAGAAGCTTATGCTCACCTTCTAAATGTTCTTGCATCTGAATACACTAATCCATCGACATTGGCTGTGAAAAATCCGTTTGAAAGAGCAAAACTAGTTCTTGAACATGCTGAAAAGATGGGTTGCAAGAGATACTTAACTGCTAGAGATATCATTGAAGGTTCACCAAATCTTAATCTTGCTTTTGTTGCACATATTTTCCAAATCAGGAATGGACTTTCAGCTCTAGCAAAACAAAGTTCTCTCCTTGACTCATTGGTAGATGATACACAAGACTCAAGAGAAGAGAGAGTTTTTCGTCTTTGGATTAATAGTCTTGGAAATTCAACATATATCAACAATGTGTTTGAGGATGTCCGGAACGGGTGGGTACTTTTAGAGACTCTTGACAAAGTGTCACCTGGGATTGTTAATTGGAAGATTGCAAACAAGCCTCCTATAAAGATGCCATTTAAAAAAGTTGAGAATTGCAATCAAGTTGTGAAAATAGGGAAACAACTTAAGTTTTCCTTGGTGAATATTGCTGGAAATGACATTGTGCAGGGATATAAAAAATTAATACTAGCATATTTGTGGCAATTGATGAGATGCAATATCCTACAACTTCTAAAGAACTTGAGATTTCACTCTCATGGGAAAGAAATAACTGATTCTGATATTCTGCAATGGGCAAACACCAAAGTGAGAAACTCAGGAAGCCAAAGCCATATATATAGTTTCAAGGATAAAAGTTTATCAGATGGAATATTTTTTCTGGAGCTCCTCAGTTCTGTACAACCTAGAGCTGTGAATTGGGGTCTTGTAACAAAAGGAGTAACTGATCAAGAGAAAATGATGAATGCTACCTACATTATCAGTATTGCAAGAAAGCTTGGATGTTCAATATTCTTGCTTCCTGAAGACATCACTGAGGTAAATCAGAAGATGATCCTTACACTAACAGCAAGTATAATGTATTGGTTCTTAAAACACCCTGCTGTTGTTGAAGAAAGGACAAGTTCAGATTGTGAGAGTCAAGTGGAGACCATATCAAATTCAACACTTGATGATTCTGCTTCTGATTTATCAGCAGAAGAGAACATGTAA 1992 0.3655 MSSHWGIIVSDPWLQNQFTQVELRSLKSQFMIMRRESGELTIADLSSKMSRLKVVGENLSEEERDSYINDLYKKSDEDVDFELFLKVYLKLQTFASSRTGSNNAKNSSAFLKVATTTLLHTISESEKASYVTHINNYLAEDEFLKKYLPLDPSTNDLFEIAKDGVLLCKLINVAVPTTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDLIEGRRHLVLGLISQIIKIQLLANLNLKKTPQLLELVGWDSKDMEELMSLPPEKILLRWMNFHLKKTEYKKIVANFSSDVKDAEAYAHLLNVLASEYTNPSTLAVKNPFERAKLVLEHAEKMGCKRYLTARDIIEGSPNLNLAFVAHIFQIRNGLSALAKQSSLLDSLVDDTQDSREERVFRLWINSLGNSTYINNVFEDVRNGWVLLETLDKVSPGIVNWKIANKPPIKMPFKKVENCNQVVKIGKQLKFSLVNIAGNDIVQGYKKLILAYLWQLMRCNILQLLKNLRFHSHGKEITDSDILQWANTKVRNSGSQSHIYSFKDKSLSDGIFFLELLSSVQPRAVNWGLVTKGVTDQEKMMNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLKHPAVVEERTSSDCESQVETISNSTLDDSASDLSAEENM 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01275 663 CDD CH_AtFIM_like_rpt1 125 240 - -
Mepo3g01275 663 Gene3D - 12 91 - -
Mepo3g01275 663 Gene3D - 120 246 IPR036872 -
Mepo3g01275 663 SMART ch_5 126 239 IPR001715 GO:0005515
Mepo3g01275 663 SMART ch_5 272 371 IPR001715 GO:0005515
Mepo3g01275 663 SMART ch_5 397 499 IPR001715 GO:0005515
Mepo3g01275 663 SMART ch_5 518 622 IPR001715 GO:0005515
Mepo3g01275 663 SUPERFAMILY EF-hand 14 95 IPR011992 -
Mepo3g01275 663 PANTHER FIMBRIN/PLASTIN 4 625 IPR039959 GO:0051015|GO:0051017
Mepo3g01275 663 FunFam Fimbrin-2 isoform A 247 376 - -
Mepo3g01275 663 SUPERFAMILY Calponin-homology domain, CH-domain 122 621 IPR036872 -
Mepo3g01275 663 FunFam Fimbrin-1 isoform A 509 621 - -
Mepo3g01275 663 FunFam Fimbrin-2 like 391 508 - -
Mepo3g01275 663 ProSiteProfiles Calponin homology (CH) domain profile. 395 501 IPR001715 GO:0005515
Mepo3g01275 663 ProSitePatterns Actinin-type actin-binding domain signature 2. 213 237 IPR001589 -
Mepo3g01275 663 Gene3D - 391 508 IPR036872 -
Mepo3g01275 663 FunFam Fimbrin-2 like 120 246 - -
Mepo3g01275 663 ProSiteProfiles Calponin homology (CH) domain profile. 124 241 IPR001715 GO:0005515
Mepo3g01275 663 Pfam Calponin homology (CH) domain 147 239 IPR001715 GO:0005515
Mepo3g01275 663 Pfam Calponin homology (CH) domain 271 372 IPR001715 GO:0005515
Mepo3g01275 663 Pfam Calponin homology (CH) domain 397 499 IPR001715 GO:0005515
Mepo3g01275 663 Pfam Calponin homology (CH) domain 519 623 IPR001715 GO:0005515
Mepo3g01275 663 ProSiteProfiles Calponin homology (CH) domain profile. 516 624 IPR001715 GO:0005515
Mepo3g01275 663 ProSitePatterns Actinin-type actin-binding domain signature 1. 397 406 IPR001589 -
Mepo3g01275 663 Gene3D - 509 621 IPR036872 -
Mepo3g01275 663 CDD CH_AtFIM_like_rpt3 393 506 - -
Mepo3g01275 663 ProSiteProfiles Calponin homology (CH) domain profile. 270 373 IPR001715 GO:0005515
Mepo3g01275 663 Gene3D - 247 376 IPR036872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01275 Mepo-Chr3 19185618 19192243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01275 1 626 EF-hand Containing Proteins AT5G55400 66.401 0.0 862
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01275 - - gmx:100805133 1147.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g01275 3 19185618 19192243 Mepo1g04497 1 52740837 52746509 PCT