Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g00781 ATGCGGTCAATATATCGTCTTGTTGTTCGTGATCGCTTTGGCATATTTTGTCTGCCTCTTAAGTCAAGAACTTCATTTTCTTCTTTAGCAACATGTCACCCTGCAGAAGCTAAAGAACAAACTCAAGACCTTACGAGATCTGTGGACATTCTTACTACAAAAATTGGCAAACGAAACAGCGAGGACGACATTCTCCAATCTCTAATCAGTGACGAAGCCGTAAGTGGTGTACATTTGTCTGAAAACCTTATTAATAGATTGCTATTTCGATATAAGGATGATTGGAAGTCTGCATTGGCGGTATTCAGATGGGCCGATTCACATTCAAACTTTAAACATTCGCAACAATCGTATGATATGATGGTAGATATATTGGGTAGAATGAAGGTAATGGACAAGATGAGAGAGATCTTAGAAGAAATGCGTCAGGAGAGTCTCATCACTCTCGATACTATAGCTAAGGTAATGAGAAGGTTTGTTGGGGCAAGACAGTGGAAAGATGCTGTGAGGATATTTGATGAATTGCAATTTCTCGGCTTGGAGAAGAATACAGAGTCCATGAATGTGTTGCTTGATACTCTTTGCAAAGAGAAATTTGTTGAACAAGCTCGCGAAATTTACTTGGAGCTGAAGCATTACATTGCTCCAAACGCTCACACGTTTAACATACTTATTCATGGATGGTGCAATATCCGACGTGTTGAAGAGGCACATTGGACAATCCAAGAGATGAAAGGATATGGTTGTCGCCCTTGTGTTATAAGTTATTCCACCATCATTCAATGTTATTGTCAAGAACAGAATTTTGACAGGGTTTACGATCTTCTCGATGAAATGCAAGCTCTTAATTGCTCCCCAAATGTGGTCACATATACTACTATAATGTGCGCACTCGCAAAAGCAGAGAAATTTGACGAAGCTTTACAAGTTGTTGAAAGAATGAATGCTGTTGGATGTAGGCCTGATACGCTCTTTTTCAATTCGTTCATTTATACGTTGGGGAGAGCAGGCAGAATAGATGATGCTACATATGTATTCAAGGTTGCGATGCCAAAGGCCAGTGTGGCCCCAAATACATCGACCTATAACTCAATGATTTCTATGTTTTGTTACTATGCACAAGAAGAGAGAGCTTTTGGCATACTGAAGGAGATGGAAAAATCAGGTCTTTGTAAGCCTGATATTCAGACTTATCACCCATTGATCAAGTCATGGTTTAAAATGAGGGAAATAGATACTTGGTTGAATGATATATTAAATGACATGGTAAATAAATATCATATTGGTCTTGACCTTTCAACCTATACATTGCTAATTCATGGGCTTTGCAGAGCAGATAGATGCAAGTGGGCATTCGATCTGTTCGAGGAGATGGTTGATCAAGATATCGTGCCTAGATACAAAACTTGCCGTTTGCTCTTGGATGAAGTCAAACAGAAAAATATGTATCAAGCTGTTGAGAAAATTGAGGTTCTTATGAAGAAACTTTAA 1491 0.3883 MRSIYRLVVRDRFGIFCLPLKSRTSFSSLATCHPAEAKEQTQDLTRSVDILTTKIGKRNSEDDILQSLISDEAVSGVHLSENLINRLLFRYKDDWKSALAVFRWADSHSNFKHSQQSYDMMVDILGRMKVMDKMREILEEMRQESLITLDTIAKVMRRFVGARQWKDAVRIFDELQFLGLEKNTESMNVLLDTLCKEKFVEQAREIYLELKHYIAPNAHTFNILIHGWCNIRRVEEAHWTIQEMKGYGCRPCVISYSTIIQCYCQEQNFDRVYDLLDEMQALNCSPNVVTYTTIMCALAKAEKFDEALQVVERMNAVGCRPDTLFFNSFIYTLGRAGRIDDATYVFKVAMPKASVAPNTSTYNSMISMFCYYAQEERAFGILKEMEKSGLCKPDIQTYHPLIKSWFKMREIDTWLNDILNDMVNKYHIGLDLSTYTLLIHGLCRADRCKWAFDLFEEMVDQDIVPRYKTCRLLLDEVKQKNMYQAVEKIEVLMKKL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g00781 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 357 IPR002885 -
Mepo3g00781 496 Pfam PPR repeat 431 459 IPR002885 -
Mepo3g00781 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Mepo3g00781 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Mepo3g00781 496 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 151 489 - -
Mepo3g00781 496 Pfam PPR repeat 117 144 IPR002885 -
Mepo3g00781 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Mepo3g00781 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Mepo3g00781 496 NCBIfam pentatricopeptide repeat 434 465 IPR002885 -
Mepo3g00781 496 NCBIfam pentatricopeptide repeat 361 394 IPR002885 -
Mepo3g00781 496 NCBIfam pentatricopeptide repeat 289 323 IPR002885 -
Mepo3g00781 496 NCBIfam pentatricopeptide repeat 254 288 IPR002885 -
Mepo3g00781 496 NCBIfam pentatricopeptide repeat 219 251 IPR002885 -
Mepo3g00781 496 Gene3D Tetratricopeptide repeat domain 348 496 IPR011990 GO:0005515
Mepo3g00781 496 Gene3D Tetratricopeptide repeat domain 282 347 IPR011990 GO:0005515
Mepo3g00781 496 Gene3D Tetratricopeptide repeat domain 213 281 IPR011990 GO:0005515
Mepo3g00781 496 Gene3D Tetratricopeptide repeat domain 72 212 IPR011990 GO:0005515
Mepo3g00781 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Mepo3g00781 496 Pfam PPR repeat family 251 300 IPR002885 -
Mepo3g00781 496 Pfam PPR repeat family 357 404 IPR002885 -
Mepo3g00781 496 Pfam PPR repeat family 182 230 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g00781 Mepo-Chr3 10993183 10994673 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g00781 189 495 Miscellaneous Gene Families AT4G11690 26.045 7.93e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g00781 - - aip:107605030 739.954