Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mepo2g02485 | ATGCCAATCCCATTCAAGCGCTTCAAACCCACCGATCTATGCATCGTCAAACCCATCCTCTCTTCCAAAACTCATCTCTCCGACGCCGTTTCTTCTCTTGACGTTTTACATCCCAAAGGCATTCGTTTACCTTCTCACATTCTCGCTACTCTATTGCGCCGTTGTTCTGATACCAAGTCATACAAAGAGGGTAAGCTTGTTCATCTTCATTTGAAGCTTACCGGTTTTAAACGACCCACTACACTTATTGCCAATCATTTGATTCATATGTACTTTTGTTGCGGTGATTATGTTCGTGCACGTAAGGTGTTTGATGAAATGGATGTTATAAATTTGTATTCTTGGAATAATATGATTTCTGGGTATGTTAAATTAGGGATGATGAAACAAGCTAGGGGTGTGTTTTATAAAATGCCGGAGAAGGATTGTGTGTCGTGGAATGCGATGGTGGTTGGTTATGCGCATTGTGGGAGGTTTAGTGAGGCTTTGAGGTTTTATGGATGGATGAGGAGGGTTTGTGTTGGATATAATGAGTTTACGTTTGCTAGTGTTTTGATTGTTTGTGTTAAGTTGAAAGAGTTTGAACTTTGTAGACAGATTCATGGGCAGGTTTTAGTTGTTGGGTTTTTGTCTAATGTGGTTGTTTCTAGCTCAATTGTAGATGCTTATGCAAAATGTCGTAAAATGGAAGATGCTATGAGATTGTTTGATCATATGACTGTGAGGGATATTCCTGCTTGGACGACGTTAGTTTCAGGATATGCCTTATGTGGGGATATGGATTCAGCTGCTGAAATGTTTAGTCAGATGCCCAAGAAAAATTCATATTCGTGGACGGCTTTGATTGGCGGATATGCAAGAAATGGTATGGGTCATAAAGCTCTTGGAGTGTTTAGAAAGATGATCATGCATCGAGTTAGGCCTGATGAATTTACATTCAGTAGTTGCCTGTTTGCTTGTGCCAATATTGCTTCACTGAAGCATGGTAAACAGTTACATGCTTTTTTGTTGCGGAATAACATCAGACCTAATCCTGTTGTTGTTAGTGCTGTTGTTGACATGTATGCAAAATGTGGAAGCTTGGAGACTGCTAGGCAAGTCTTTAAATTCGGCGGAAATATGCAAGATGTAGTGTTGTGGAACACTATGATATCAGCACTGGCTCACTATGGCTATGGTAAAGAAGCAGTTTTGATGCTCAATGATATGCTGAAATCAGGAGTGAAGCCTAATAGGAACACTTTGGTTGCTATTCTAAATGCTTGTAGTCATTCCGGCCTTGTTTGTGATGGGCTTCAGTGTTTCAAGTCCATGACTAATGATCACGGTGTTGTCCCAGACCTAGAACACTACGCACACCTAATTGATCTTTTGGGTCGAGCTGGATGTTTTGTTGAATCGTTGAAGGATCTATTCATTATAGATTGTAAACCAGGTGACCATGTTTTGTATTCTTTGCTCTGTGTATGTAGACCGAATGGTAGTATAGGTGTCGGAAGAGACGTAGCTGAATTCCTTATCAAATGGCAGCCTCAATCTTCTGCTGCTTATGTATTACTTTCCAGTATATATGCTGCACTTGTGACATGGGGATTGGTTGACGAAGCAAGACATATAATGGATGAGAGACGCCTGAGGCAAGATCGGTCTATTAGTTGGATCGAAATTGAAAATGAAGTCCATGCTTTCGCCATATCAGATGGATTGAACCCTTTGAAGGAAACAATATACTCAGCTTTGGGGCACTTAAATTACCAGATAGAGGACAATGCCCCATAA | 1779 | 0.4058 | MPIPFKRFKPTDLCIVKPILSSKTHLSDAVSSLDVLHPKGIRLPSHILATLLRRCSDTKSYKEGKLVHLHLKLTGFKRPTTLIANHLIHMYFCCGDYVRARKVFDEMDVINLYSWNNMISGYVKLGMMKQARGVFYKMPEKDCVSWNAMVVGYAHCGRFSEALRFYGWMRRVCVGYNEFTFASVLIVCVKLKEFELCRQIHGQVLVVGFLSNVVVSSSIVDAYAKCRKMEDAMRLFDHMTVRDIPAWTTLVSGYALCGDMDSAAEMFSQMPKKNSYSWTALIGGYARNGMGHKALGVFRKMIMHRVRPDEFTFSSCLFACANIASLKHGKQLHAFLLRNNIRPNPVVVSAVVDMYAKCGSLETARQVFKFGGNMQDVVLWNTMISALAHYGYGKEAVLMLNDMLKSGVKPNRNTLVAILNACSHSGLVCDGLQCFKSMTNDHGVVPDLEHYAHLIDLLGRAGCFVESLKDLFIIDCKPGDHVLYSLLCVCRPNGSIGVGRDVAEFLIKWQPQSSAAYVLLSSIYAALVTWGLVDEARHIMDERRLRQDRSISWIEIENEVHAFAISDGLNPLKETIYSALGHLNYQIEDNAP | 592 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mepo2g02485 | 592 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 24 | 140 | IPR046960 | GO:0003723|GO:0009451 | |
| Mepo2g02485 | 592 | Pfam | PPR repeat | 217 | 243 | IPR002885 | - | |
| Mepo2g02485 | 592 | Pfam | PPR repeat | 144 | 167 | IPR002885 | - | |
| Mepo2g02485 | 592 | Pfam | PPR repeat | 347 | 369 | IPR002885 | - | |
| Mepo2g02485 | 592 | Pfam | PPR repeat | 85 | 108 | IPR002885 | - | |
| Mepo2g02485 | 592 | Pfam | PPR repeat | 113 | 143 | IPR002885 | - | |
| Mepo2g02485 | 592 | Gene3D | Tetratricopeptide repeat domain | 326 | 441 | IPR011990 | GO:0005515 | |
| Mepo2g02485 | 592 | Gene3D | Tetratricopeptide repeat domain | 243 | 325 | IPR011990 | GO:0005515 | |
| Mepo2g02485 | 592 | Gene3D | Tetratricopeptide repeat domain | 178 | 242 | IPR011990 | GO:0005515 | |
| Mepo2g02485 | 592 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 274 | 308 | IPR002885 | - | |
| Mepo2g02485 | 592 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 212 | 246 | IPR002885 | - | |
| Mepo2g02485 | 592 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 111 | 145 | IPR002885 | - | |
| Mepo2g02485 | 592 | NCBIfam | pentatricopeptide repeat | 276 | 310 | IPR002885 | - | |
| Mepo2g02485 | 592 | NCBIfam | pentatricopeptide repeat | 218 | 244 | IPR002885 | - | |
| Mepo2g02485 | 592 | NCBIfam | pentatricopeptide repeat | 113 | 144 | IPR002885 | - | |
| Mepo2g02485 | 592 | NCBIfam | pentatricopeptide repeat | 246 | 273 | IPR002885 | - | |
| Mepo2g02485 | 592 | NCBIfam | pentatricopeptide repeat | 378 | 411 | IPR002885 | - | |
| Mepo2g02485 | 592 | NCBIfam | pentatricopeptide repeat | 144 | 169 | IPR002885 | - | |
| Mepo2g02485 | 592 | Gene3D | Tetratricopeptide repeat domain | 19 | 171 | IPR011990 | GO:0005515 | |
| Mepo2g02485 | 592 | FunFam | Pentatricopeptide repeat-containing protein At2g21090 | 191 | 325 | - | - | |
| Mepo2g02485 | 592 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 376 | 410 | IPR002885 | - | |
| Mepo2g02485 | 592 | Pfam | PPR repeat family | 376 | 423 | IPR002885 | - | |
| Mepo2g02485 | 592 | Pfam | PPR repeat family | 273 | 321 | IPR002885 | - | |
| Mepo2g02485 | 592 | FunFam | Pentatricopeptide repeat-containing protein, chloroplastic | 346 | 572 | - | - | |
| Mepo2g02485 | 592 | FunFam | Pentatricopeptide repeat-containing protein At3g49710 | 53 | 190 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mepo2g02485 | Mepo-Chr2 | 34636084 | 34638899 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mepo2g02485 | 126 | 588 | Glycoside Hydrolase | AT3G49170 | 31.613 | 1.59e-76 | 258 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mepo2g02485 | - | - | pcin:129297573 | 778.859 |