Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mepo2g02310 | ATGGAGGAAAAACGTCCTCCATCCGCCGTCGACACACCGGCACCAGAACCAACACCGACTCGCCGCCGTGCCGGAGGAAACAAACGAAAATCCGGTTCCCTCAACGCCTCAAATTCCGCTTCAACCTCTTCCAAACGCATTACTCGCGAGAAAGCTTCACCTCTTCACCATCCTCCTCCGCATAACGGTCCCTTAACTAGGGCTCGTCAAATCCCTAACAATTCCTCCGCCGCCGCGAATTCTTCGACCGCTGGTGGTTCTGCTTCTGCTCCCGCCGCGGTGAAACATGCTCCACAGACGCAGGCTTTGGTTGTGGCGGCGGAGCAGCTTAAGAAGAAGGAGAGTGAGTGGGAGAGTATGGAAGCTGAGATTGAAGCGGAATTCAAAGCTATTAGATCTCGTGATGCGAATGCTCATGTTGTTCCTACTCATTGTGGTTGGTTTTCGTGGTCGGATATACATTCAATTGAGAAACGTATGATGCCTTCTTTCTTTAATGGAATATCTGAAAATCGGACTCCGGATAAATACATGGAGATACGGAATTGGATATTGAAGAAGTTTCATTCAAATCCAAATATACAAATTGAGTTGAAAGATTTATCAGAGCTTGATATTGGGGATTCGGATGCTAGGCAAGAGATAATGGAGTTTCTTGACTATTGGGGTTTAATTAACTTCCACCCGTTCCCTTCAATGGATTCTGCCGTTGCAAGCACCGTCGACGATGGGGAAGCAGAAAAGAATTCCTTGCTTGAAAAACTATATCACTTTGAAACTCTTCAAGTATGCCCGCCTGCTGTTCAGAAGACTGGCCTAATAACTCCTGCTATGACCTCTGGCTTGTTTCCAGAGCCAGCGATTGCTGAAGAGTTGGTGAAACAAGAGGGCCCAGCAGTTGAGATGCTTGAGTACCATTGCAACTCTTGTTCTGGTGATTGTTCTCGCAAACGTTACCACTGCCAGAAGCAGGCAGATTTTGATCTATGTACGGACTGCTTCAATAATAGAAAATTTGACACCGGCATGTCTCCATTGGATTTTATACTCATGGAACCAGCTGAAGCTGCAGGGGTTAGTAGTGGAAAGTGGACTGATCAGGAGACACTTCTGCTCCTTGAAGCATTAGAACTCTATAAAGAAAATTGGACTGAAATTGCAGAACATGTTGGAACAAAATCAAAAGCTCAGTGCATATTACATTTCGTTCAAATGCCAATTGAGGATGCCTTTGTTGACTGTGATGATGATGTTGATGCTGGTTCCAAAGAAACTGCAGATCCAGCTGCAACAAACAACAATTTGTCTATGGATGAAGATAAAGCTAAAGATGCGTCAGAAGTTATTGAGAATGACATTAGTGATAGCATCAAAGGCCATGATGAAACTTCTCAGGCTGAAGATGTCAAAGTGAAAGATAATCAAGAGGAGACTCCAAAGTTACAAGATGGTAGTGATGAGAAAACTAGTGAGGGAACTCCTAAATTAGAAGATGATAATAAAGTAAAATTGGGCGAGGAAGTAGGTGATGACTGTGTTTTAAATGCTCTTAAGGAAGCATTTGCAGCTGTTGGTTATTCTCCTGAACCTGAAGGCCCATATTCATTTGCTGAAGTGGGTAATCCTGTCATGGCATTGGCAGCTTTCCTTGCACAGTTGGTAGGTTCTGATCTGGCTGTTGCTTCAGCTCATAACTACATAAAATCCTTGTCTGGAAATGCTCCTAGCACTGATATTGCTTCAAGGTGTTGCTTTGTTCTAGAAGATCCACCAGATGATAAGAAGGAAACAACTACTTCTGAGAGGGATTCTAAAATTGAGGGAGATCAGACTGACAAAAATGTACAACAGGATGCAGTAATGTTAGATGATAAAGATTTAGAAAATGATCACCAGAAAACAAAGATTGCAAGTGATGCTTCAGAAGGCAAGATATATCAGGCTTCTACAGATGGTGTTATCTCAGAAAAATCAATTTCTTCAAAGGGGCAAGAAATGAATAATCATGAGAGTGGGCTTGACAACTGTAATGATCCCAGCATTTCAAAGGCACCCAATGGTCAAGCTCAGGGTACTCTGCCTAATTCAGGTGGTTCAAAATCCAAAGCTGAAACTCCACCTAGTTCTGAGGAGGTTCGAGAGGGAACTTCAAATGAAGAACCTGTCCATCCTATAGAGGAACAAAAAAAAGGAAGCGTGTCTGATTCTCATCCATCTGAAAAGAAGGAAATTCAACAATCAGTTAAATCCAATTTACCAGTTGAGCTACCAAAGCCAGCAGAGACACCAAAGTCTGATGACATGGTGTCTGATTCTATGCCCTCAGATCCGAGCAAGCCTCAAAAACAGTTATCTACAAATGCAGTCTCTGAGTCTCAAAAAACTACAGACTCTGCAATGGATGTTGATGTAGTTTCTAATTCCTTGCCATCAAAGATTGACTCCCAGCCACCAACATCTTCCCAAGATAATGGGACACAAAAGGATGTAGATATGATGCCATCTTCGCATCCAATTAAATCGAGTGTGGGTGCTGAAAATGGTGCAACTGCAGGGGCAGTTGAAGATTGTGCAGGAAATGGTATGGAAGTGAAAAATGACGGTTCAAAGACTAAACAGGATAGCAGCTTTGAGAAAGTGAAACGTGCAGCTGTTTCTACATTAGCAGCAGCAGCAGTGAAGGCAAAAGTTCTAGCAAATCAAGAAGAAGATCAAATCCGACAACTTACTTCAGCGTTGATAGAAAAGCAGTTGCATAAGTTGGAAACAAAGTTGGCTTTCTTCAATGATATGGAACATTTGGTGATGAGAGTAAAGGAGCTTTTAGATCGGTCGCGGCATAAGCTTTACCATGAACGTGCTATGATAATTTCATCCCGCCTTGGTGTACCGGCTTCCTCATCTAGAGGTGTGCCACCATCCATACCAACTAATAGGATTCCTATGAATTTTGCAAACTCACTCCAAAGACCACAATTCAGCATGAATCCTCAAGGGCCGCTTATTTCTAGACCTGTGAGCACCGCTGCTACTACCCCTCCAAACCCCTTAATGTCTGCAACTGCAGCAGGAAGTTCAGTTCGGCCATCCAGCCAGGAAAACCTTTCTTCTGTTAGGACAGAATAA | 3126 | 0.4322 | MEEKRPPSAVDTPAPEPTPTRRRAGGNKRKSGSLNASNSASTSSKRITREKASPLHHPPPHNGPLTRARQIPNNSSAAANSSTAGGSASAPAAVKHAPQTQALVVAAEQLKKKESEWESMEAEIEAEFKAIRSRDANAHVVPTHCGWFSWSDIHSIEKRMMPSFFNGISENRTPDKYMEIRNWILKKFHSNPNIQIELKDLSELDIGDSDARQEIMEFLDYWGLINFHPFPSMDSAVASTVDDGEAEKNSLLEKLYHFETLQVCPPAVQKTGLITPAMTSGLFPEPAIAEELVKQEGPAVEMLEYHCNSCSGDCSRKRYHCQKQADFDLCTDCFNNRKFDTGMSPLDFILMEPAEAAGVSSGKWTDQETLLLLEALELYKENWTEIAEHVGTKSKAQCILHFVQMPIEDAFVDCDDDVDAGSKETADPAATNNNLSMDEDKAKDASEVIENDISDSIKGHDETSQAEDVKVKDNQEETPKLQDGSDEKTSEGTPKLEDDNKVKLGEEVGDDCVLNALKEAFAAVGYSPEPEGPYSFAEVGNPVMALAAFLAQLVGSDLAVASAHNYIKSLSGNAPSTDIASRCCFVLEDPPDDKKETTTSERDSKIEGDQTDKNVQQDAVMLDDKDLENDHQKTKIASDASEGKIYQASTDGVISEKSISSKGQEMNNHESGLDNCNDPSISKAPNGQAQGTLPNSGGSKSKAETPPSSEEVREGTSNEEPVHPIEEQKKGSVSDSHPSEKKEIQQSVKSNLPVELPKPAETPKSDDMVSDSMPSDPSKPQKQLSTNAVSESQKTTDSAMDVDVVSNSLPSKIDSQPPTSSQDNGTQKDVDMMPSSHPIKSSVGAENGATAGAVEDCAGNGMEVKNDGSKTKQDSSFEKVKRAAVSTLAAAAVKAKVLANQEEDQIRQLTSALIEKQLHKLETKLAFFNDMEHLVMRVKELLDRSRHKLYHERAMIISSRLGVPASSSRGVPPSIPTNRIPMNFANSLQRPQFSMNPQGPLISRPVSTAATTPPNPLMSATAAGSSVRPSSQENLSSVRTE | 1041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mepo2g02310 | 1041 | SUPERFAMILY | RING/U-box | 299 | 342 | - | - | |
| Mepo2g02310 | 1041 | ProSiteProfiles | Zinc finger ZZ-type profile. | 302 | 356 | IPR000433 | GO:0008270 | |
| Mepo2g02310 | 1041 | MobiDBLite | consensus disorder prediction | 647 | 835 | - | - | |
| Mepo2g02310 | 1041 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 362 | 398 | IPR017930 | - | |
| Mepo2g02310 | 1041 | ProSiteProfiles | Myb-like domain profile. | 356 | 406 | IPR001005 | - | |
| Mepo2g02310 | 1041 | MobiDBLite | consensus disorder prediction | 996 | 1041 | - | - | |
| Mepo2g02310 | 1041 | Gene3D | - | 299 | 348 | IPR043145 | - | |
| Mepo2g02310 | 1041 | PANTHER | SWI/SNF COMPLEX-RELATED | 68 | 957 | - | - | |
| Mepo2g02310 | 1041 | MobiDBLite | consensus disorder prediction | 706 | 744 | - | - | |
| Mepo2g02310 | 1041 | MobiDBLite | consensus disorder prediction | 30 | 48 | - | - | |
| Mepo2g02310 | 1041 | MobiDBLite | consensus disorder prediction | 651 | 705 | - | - | |
| Mepo2g02310 | 1041 | Pfam | SWIRM domain | 142 | 227 | IPR007526 | GO:0005515 | |
| Mepo2g02310 | 1041 | ProSitePatterns | Zinc finger ZZ-type signature. | 307 | 333 | IPR000433 | GO:0008270 | |
| Mepo2g02310 | 1041 | SMART | sant | 360 | 408 | IPR001005 | - | |
| Mepo2g02310 | 1041 | MobiDBLite | consensus disorder prediction | 588 | 616 | - | - | |
| Mepo2g02310 | 1041 | Gene3D | - | 145 | 230 | IPR036388 | - | |
| Mepo2g02310 | 1041 | Pfam | Myb-like DNA-binding domain | 362 | 404 | IPR001005 | - | |
| Mepo2g02310 | 1041 | Coils | Coil | 103 | 127 | - | - | |
| Mepo2g02310 | 1041 | SUPERFAMILY | Homeodomain-like | 146 | 228 | IPR009057 | - | |
| Mepo2g02310 | 1041 | CDD | ZZ_RSC8 | 305 | 349 | IPR041984 | - | |
| Mepo2g02310 | 1041 | MobiDBLite | consensus disorder prediction | 437 | 503 | - | - | |
| Mepo2g02310 | 1041 | MobiDBLite | consensus disorder prediction | 623 | 642 | - | - | |
| Mepo2g02310 | 1041 | MobiDBLite | consensus disorder prediction | 67 | 88 | - | - | |
| Mepo2g02310 | 1041 | SMART | zz_5 | 301 | 345 | IPR000433 | GO:0008270 | |
| Mepo2g02310 | 1041 | MobiDBLite | consensus disorder prediction | 1 | 95 | - | - | |
| Mepo2g02310 | 1041 | CDD | SANT | 380 | 405 | IPR001005 | - | |
| Mepo2g02310 | 1041 | FunFam | SWI/SNF complex subunit SMARCC2 isoform C | 360 | 410 | - | - | |
| Mepo2g02310 | 1041 | MobiDBLite | consensus disorder prediction | 422 | 503 | - | - | |
| Mepo2g02310 | 1041 | MobiDBLite | consensus disorder prediction | 768 | 831 | - | - | |
| Mepo2g02310 | 1041 | Pfam | Zinc finger, ZZ type | 304 | 338 | IPR000433 | GO:0008270 | |
| Mepo2g02310 | 1041 | ProSiteProfiles | SANT domain profile. | 359 | 410 | IPR017884 | - | |
| Mepo2g02310 | 1041 | Pfam | SWIRM-associated region 1 | 887 | 965 | IPR032451 | - | |
| Mepo2g02310 | 1041 | ProSiteProfiles | SWIRM domain profile. | 139 | 236 | IPR007526 | GO:0005515 | |
| Mepo2g02310 | 1041 | MobiDBLite | consensus disorder prediction | 623 | 638 | - | - | |
| Mepo2g02310 | 1041 | Gene3D | - | 359 | 410 | - | - | |
| Mepo2g02310 | 1041 | SUPERFAMILY | Homeodomain-like | 359 | 411 | IPR009057 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mepo2g02310 | Mepo-Chr2 | 32836617 | 32843925 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mepo2g02310 | 305 | 402 | EF-hand Containing Proteins | AT3G07740 | 36.697 | 2.54e-12 | 68.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mepo2g02310 | K11649 | - | gmx:100799723 | 1306.97 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Mepo2g02310 | 2 | 32836617 | 32843925 | Mepo2g02310 | 2 | 32836617 | 32843925 | ECH |