Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo2g02252 ATGACAAACACAAAAGGTGGAACCATGTTAGTAGAGAGAAACACCAATAAAATACATAGACCAAAATTTGGTGCTTTTCTTCACTCAGAACCCTCGTTATTTCACACCACCAACAACGACGATGATCAAGGCCGTATCAGCAACGCCTCGGCCGCGAGTCCTCGAACATACTTCGGTGACAGCAGCAGCAGCAATAATGCTTCTCCTAATTACATGTTATCTCCATGGAACCAAACTTCTTCTCCTCTCAACAAATCACCATGGTTAATGCCAACATCAGAAGCAATTAACCTCTTCCAATACCACCACAGCCACCGCCACGGTAACAATTACAACGACAGTTATTTCCCGGAAAATGGCCTCATCGGGTCACTATCTCGCGAAGAAGGTCACATCTACTCCTTAGCTGTTTCCGGTGACATGTTATACACCGGTACCGATAGCAAAAACATAAGGGTGTGGAAAGAACTTAAAGATTATACCGGTTTTAAATCAAGCAGTGGTTTGGTCAAATCCATTGTTATATCCGAAGGAAACATCTTCACCGGTCACCAAGATGGAAAAATCAGAGTTTGGAAAATTTCTTCAAAAAATTCTAGAAATCATAAGCGTATTGGAAGCTTGCCAACTTTCAAAGACTATGTCAAAAGCTCGATGAATCCGAAGAATTACGTGGAAGTAAGGCGACGTAGAAACACGGTGAAGGTGAAGCATTTTGACGCTGTTTCGAGTCTGAGTTTGGATCAAGAAGGAGGATTGTTGTATTCAGGTTCATGGGATAAAACTCTCAAAGTTTGGCGCGTTGCGGATTTCAAGTGTTTGGAATCTATTATTGCTCATGATGATGCTGTCAACGCCGTGGTTGCTGCATTTCAAACCTATGTTTTCACCGGCTCAGCCGATGGAACGGTGAAGATGTGGAGGAGAGAAACCGAAGGAAAAGGGAAGAAAACGAAGCATGTTTTGGATAGGATTTTGTTGAAGCAAGAAAACGCTGTAACGGCTTTGACGGTTAACCATTCATCAACGATTATTTATTGCGGTTCTTCTGATGGATTGGTTAACTTTTGGGAGCGTCAGCAAAAGAATAACCTCACTCACGGCGGCGTTTTAAAGGGACACAAACTCGCAGTACTATGTCTCGCCGCGGCAGGGAACCTTGTTTTCAGTGGTTCTGCTGATAAGAATGTTTGCGTGTGGAGGCGCGACGAAAGAGGGGCACACATTTGTCTTTCTGTTTTGACTGGACACACTGGTCCAGTCAAATGCATTGCCGTTGAAGAACACGAGGAGGAGGACGATCGCGATGATCAACGGTGGATAGTTTACACCGGTAGTTTGGATAAGTCTGTTAAGGTCTGGCGCGTGTCTGAACATGCGCCAGAATTGAGATTGATGCAAGGTTGGAATTCTCCAATTGCACCTATTGGATATGAATCCCCCGCCATAGGATTGAATTATTCTTCACCAGGAACAATCAATAGAAGGCAGTTGCAAAAATAA 1503 0.4378 MTNTKGGTMLVERNTNKIHRPKFGAFLHSEPSLFHTTNNDDDQGRISNASAASPRTYFGDSSSSNNASPNYMLSPWNQTSSPLNKSPWLMPTSEAINLFQYHHSHRHGNNYNDSYFPENGLIGSLSREEGHIYSLAVSGDMLYTGTDSKNIRVWKELKDYTGFKSSSGLVKSIVISEGNIFTGHQDGKIRVWKISSKNSRNHKRIGSLPTFKDYVKSSMNPKNYVEVRRRRNTVKVKHFDAVSSLSLDQEGGLLYSGSWDKTLKVWRVADFKCLESIIAHDDAVNAVVAAFQTYVFTGSADGTVKMWRRETEGKGKKTKHVLDRILLKQENAVTALTVNHSSTIIYCGSSDGLVNFWERQQKNNLTHGGVLKGHKLAVLCLAAAGNLVFSGSADKNVCVWRRDERGAHICLSVLTGHTGPVKCIAVEEHEEEDDRDDQRWIVYTGSLDKSVKVWRVSEHAPELRLMQGWNSPIAPIGYESPAIGLNYSSPGTINRRQLQK 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo2g02252 500 SMART WD40_4 319 358 IPR001680 GO:0005515
Mepo2g02252 500 SMART WD40_4 229 267 IPR001680 GO:0005515
Mepo2g02252 500 SMART WD40_4 407 455 IPR001680 GO:0005515
Mepo2g02252 500 SMART WD40_4 270 308 IPR001680 GO:0005515
Mepo2g02252 500 SMART WD40_4 156 193 IPR001680 GO:0005515
Mepo2g02252 500 SMART WD40_4 364 401 IPR001680 GO:0005515
Mepo2g02252 500 SMART WD40_4 118 155 IPR001680 GO:0005515
Mepo2g02252 500 PRINTS G protein beta WD-40 repeat signature 254 268 IPR020472 -
Mepo2g02252 500 PRINTS G protein beta WD-40 repeat signature 442 456 IPR020472 -
Mepo2g02252 500 PRINTS G protein beta WD-40 repeat signature 295 309 IPR020472 -
Mepo2g02252 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 371 400 IPR001680 GO:0005515
Mepo2g02252 500 Gene3D - 116 220 IPR015943 GO:0005515
Mepo2g02252 500 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 57 460 IPR045182 -
Mepo2g02252 500 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 268 - -
Mepo2g02252 500 SUPERFAMILY WD40 repeat-like 122 461 IPR036322 GO:0005515
Mepo2g02252 500 FunFam BnaA09g28200D protein 225 312 - -
Mepo2g02252 500 Gene3D - 322 481 IPR015943 GO:0005515
Mepo2g02252 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 276 IPR001680 GO:0005515
Mepo2g02252 500 Pfam WD domain, G-beta repeat 369 400 IPR001680 GO:0005515
Mepo2g02252 500 Pfam WD domain, G-beta repeat 410 454 IPR001680 GO:0005515
Mepo2g02252 500 Pfam WD domain, G-beta repeat 272 307 IPR001680 GO:0005515
Mepo2g02252 500 Pfam WD domain, G-beta repeat 238 266 IPR001680 GO:0005515
Mepo2g02252 500 Pfam WD domain, G-beta repeat 157 193 IPR001680 GO:0005515
Mepo2g02252 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 277 307 IPR001680 GO:0005515
Mepo2g02252 500 Gene3D - 221 321 IPR015943 GO:0005515
Mepo2g02252 500 MobiDBLite consensus disorder prediction 34 64 - -
Mepo2g02252 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 326 367 IPR001680 GO:0005515
Mepo2g02252 500 CDD WD40 129 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo2g02252 Mepo-Chr2 32228185 32230760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo2g02252 236 454 Miscellaneous Gene Families AT5G08390 25.225 1.85e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo2g02252 - - gsj:114379287 679.093