Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04742 ATGGAAGCTTTCTTTCTATTTCTTTTCTCTGTGCCTCCAAAGAAAGAAAGAACTAACCACAACATGTTCCTTTCACTCAGATACTCCTTCACATTTCTCTTCTCTACTCTTCTCCTCACATTATCATCATCTTCACCACTAGCCACCAAAATATCCATCACAAACCATGACATTCATAGCTTTTCCAATGCTGGCAGAGGCAACAACATCACAGGAATATCACAATTCAAAAGATACCTATCTCGTTTCGGGTACATTAAAAACAATGACACATTCAGCAACGAATTTGATGCGAATTTTGAATCAGCTATCATCAAATACCAAAGAAATCTTGGACTCCAAGTAACCGGTAAACTCGATTCCAACACAGTTTCTCAAATGATCACACCACGATGCGGTGTTCCAGACACAACAAAAACTCATCATCATCATAATCACCATCAAAATCGTATTCATAACACGACGAATTTTGTTTATTTTCCTGGAAAACCACGATGGTCACGTGACATGCCAATGACACTAACCTATGGCTTCTCAAGTGACTACATGATTCATAATTTGAGCATACGAGAGATAAGAGAAGCATTCAAACGAGCATTCACTAGATGGAGTTCAGTTATTCCGGTTAGTTTCGTCGAATCAGAGGATTATGGTTTCGCGGATATAAAAATAGGATTTTATAGTGGTGACCATGGTGATGGTGAGCCATTTGATGGAGTTCTTGGTGTGTTAGCCCATTCGTTCTCACCGGAGATTGGAAGACTTCACCTCGATGCAGCCGAGACTTGGGCGGTTGATTTCGATGTAACGAAATCGGAGGTGGCAATTGATTTGGAGTCAGTTGCAACACATGAGATTGGACATTTGTTGGGTTTGTCACATAGTTCTTTGAAAGAGGCAGTAATGTATCCAAGTTTAAGGCCAAGAGATAAAAGAGCTGATTTGAATATTGATGATATTAAAGGTGTACAATCTCTTTATGGTTCTAATCCTAATTTTAGATCTCAGTGGTCTTCATTGGAATCTGATATCTCCACAAATCATGGTGCAAAGTTTGGAGTTGACACTTTCAGGTTCTCTATGATTGGTTCCATTATTGCAATTGCCCTGTATTATATATAA 1122 0.3886 MEAFFLFLFSVPPKKERTNHNMFLSLRYSFTFLFSTLLLTLSSSSPLATKISITNHDIHSFSNAGRGNNITGISQFKRYLSRFGYIKNNDTFSNEFDANFESAIIKYQRNLGLQVTGKLDSNTVSQMITPRCGVPDTTKTHHHHNHHQNRIHNTTNFVYFPGKPRWSRDMPMTLTYGFSSDYMIHNLSIREIREAFKRAFTRWSSVIPVSFVESEDYGFADIKIGFYSGDHGDGEPFDGVLGVLAHSFSPEIGRLHLDAAETWAVDFDVTKSEVAIDLESVATHEIGHLLGLSHSSLKEAVMYPSLRPRDKRADLNIDDIKGVQSLYGSNPNFRSQWSSLESDISTNHGAKFGVDTFRFSMIGSIIAIALYYI 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04742 373 Pfam Putative peptidoglycan binding domain 73 127 IPR002477 -
Mepo1g04742 373 SUPERFAMILY PGBD-like 66 137 IPR036365 -
Mepo1g04742 373 Gene3D Collagenase (Catalytic Domain) 62 336 IPR024079 GO:0008237
Mepo1g04742 373 PRINTS Matrixin signature 196 211 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mepo1g04742 373 PRINTS Matrixin signature 315 328 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mepo1g04742 373 PRINTS Matrixin signature 127 140 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mepo1g04742 373 PRINTS Matrixin signature 281 306 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mepo1g04742 373 PRINTS Matrixin signature 220 248 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mepo1g04742 373 Pfam Matrixin 166 328 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Mepo1g04742 373 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 158 331 - -
Mepo1g04742 373 CDD ZnMc_MMP 165 328 IPR033739 GO:0008237|GO:0008270
Mepo1g04742 373 FunFam Metalloendoproteinase 1 63 333 - -
Mepo1g04742 373 SMART col_5 162 329 IPR006026 GO:0006508|GO:0008237|GO:0008270
Mepo1g04742 373 PANTHER MATRIX METALLOPROTEINASE 59 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04742 Mepo-Chr1 55467335 55468881 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04742 - K07999 gmx:100781237 470.314