Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04674 ATGGTGGAGGCGTTGAAACTGTTGAACCTAACATGGAACCCATTGAAGAACAATTTCATTCACGCATTTCGTCGAACACCTCGCACGCTTCTTATCCGCGCCTCTTCTTCTTCAACCACCTCCTCCGGTCGCAACCGCCGTAATTCTCCGTCGTCCTCCACCACTTCCACCTCCGATAGGGAGTCTATTCGAGCCATGCGCTTGAAGAAGGTTGAAGAACTTAGAAGCAAGGGGCTCGATCCCTATGCTTATGAGTGGAACAAAACGCACAGTGCAAATCAGTTACAAGATATATATAGAGATTTAGGAAATGGTGAAGAAACTAACAGTGAGAATGACTGTGTATCTATTGCGGGAAGAATAGTTGCTAGGAGAGCATTTGGAAAGCTTGCTTTTTTGACACTAAGAGACGATTCAGGGACAATTCAGCTCTATTGCGAAAAGGAGAGACTTGATGATCAGTTTGAGCAGTTGAAGGCATATGTTGATATTGGTGATATACTAGGTGCAAAAGGAACAATTAAACGCACAGAAAAAGGGGAACTTTCTGTGTGTGTGCAATCTTTTGCAATCCTTACAAAATCTTTGCTTCCACTTCCTGACAAATATCACGGTCTAACTGATATAGATATACGCTATCGCCAGAGGTATGTAGATATGATTGCAAATCCAGAGGTAGCTGATGTGTTCCGCAAAAGAGCCAAGGTTGTATCAGAGATACGGAGGACAATGGATTCTTTAGGTTTCGTTGAGGTTGAAACTCCAGTTTTGCAGGGAGAAGCTGGGGGAGCCGAAGCTAGACCATTCGTGACACACCACAATTCTCTTGGAAGAGACTTATATTTGAGAATTGCGACTGAATTGCACCTAAAGAGAATGCTGGTGGGTGGGTTTGAAAAAGTATACGAGATTGGTCGAATATTTAGAAATGAAGGAATATCAACTCGTCATAATCCGGAATTTACAACTATAGAGATGTATGAAGCATACTCAGACTACCAAAGCATGATGAATTTAGCAGAGGAAATTGTCACTCAGTGTGCTCTTGCTGTTCACGGAAAGCTTACTGTTGATTATCAGGGAGTTGAGATATGTTTGGAAAGGCCCTGGAGGAGGGAGACCATGCACAATCTTGTTAAAGAAATTTCCGGGATCGATTTCAATGAATTGGGAAATGATCTCGAGGTTGCAAAACAAGCTACTCTGAGTACCCTTGGAAAGAATCTTGATAACAAGGATAAAGCTTCCATTGAAGCATGCCAATCTGCCGGCCACCTACTTAACGAGGTTTTTGAGATATATGTAGAACCAAAGCTCATCCAACCTACATTTGTTTTAGACTACCCAATCGAGATATCTCCATTGGCTAAACCACACCGCAGATCCACAGGTTTGACTGAGAGGTTTGAACTTTTCATTTGTGGTCGGGAACTAGGCAATGCATTCTCCGAGTTGACTGATCCTATAGATCAGCGAGGACGCCTAGAAGATCAAATTAGACAACATGAAAAGAAAAAAGCAGCTCTTTCAACAAATGGTGATAAAAAAGAAGGAATAGAAAATGAGGATGATTCGTATGAAGTGACTCTTGACGATGATTTCCTAACAGCTTTGGAGTATGGAATGCCTCCAGCTTCTGGAATGGGGCTTGGGATTGACAGGCTCGTGATGCTTTTGACAAATTCTCCCAGCATTAGAGATGTAATAGCTTTCCCAGTACTTAAGGTCCAGCAATAA 1737 0.4237 MVEALKLLNLTWNPLKNNFIHAFRRTPRTLLIRASSSSTTSSGRNRRNSPSSSTTSTSDRESIRAMRLKKVEELRSKGLDPYAYEWNKTHSANQLQDIYRDLGNGEETNSENDCVSIAGRIVARRAFGKLAFLTLRDDSGTIQLYCEKERLDDQFEQLKAYVDIGDILGAKGTIKRTEKGELSVCVQSFAILTKSLLPLPDKYHGLTDIDIRYRQRYVDMIANPEVADVFRKRAKVVSEIRRTMDSLGFVEVETPVLQGEAGGAEARPFVTHHNSLGRDLYLRIATELHLKRMLVGGFEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYQSMMNLAEEIVTQCALAVHGKLTVDYQGVEICLERPWRRETMHNLVKEISGIDFNELGNDLEVAKQATLSTLGKNLDNKDKASIEACQSAGHLLNEVFEIYVEPKLIQPTFVLDYPIEISPLAKPHRRSTGLTERFELFICGRELGNAFSELTDPIDQRGRLEDQIRQHEKKKAALSTNGDKKEGIENEDDSYEVTLDDDFLTALEYGMPPASGMGLGIDRLVMLLTNSPSIRDVIAFPVLKVQQ 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04674 578 Pfam OB-fold nucleic acid binding domain 115 191 IPR004365 GO:0003676
Mepo1g04674 578 FunFam Lysine--tRNA ligase 60 201 - -
Mepo1g04674 578 MobiDBLite consensus disorder prediction 34 61 - -
Mepo1g04674 578 PANTHER LYSYL-TRNA SYNTHETASE 40 577 - -
Mepo1g04674 578 FunFam Lysine--tRNA ligase 204 578 - -
Mepo1g04674 578 NCBIfam lysine--tRNA ligase 63 576 IPR002313 GO:0004824|GO:0005524|GO:0006430
Mepo1g04674 578 Gene3D Bira Bifunctional Protein; Domain 2 204 578 IPR045864 -
Mepo1g04674 578 CDD LysRS_N 115 220 IPR044136 GO:0000166
Mepo1g04674 578 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 230 572 IPR006195 -
Mepo1g04674 578 CDD LysRS_core 223 575 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Mepo1g04674 578 Gene3D - 53 203 IPR012340 -
Mepo1g04674 578 SUPERFAMILY Nucleic acid-binding proteins 60 201 IPR012340 -
Mepo1g04674 578 MobiDBLite consensus disorder prediction 34 62 - -
Mepo1g04674 578 Coils Coil 492 512 - -
Mepo1g04674 578 Hamap Lysine--tRNA ligase [lysS]. 66 577 IPR002313 GO:0004824|GO:0005524|GO:0006430
Mepo1g04674 578 MobiDBLite consensus disorder prediction 503 523 - -
Mepo1g04674 578 PRINTS Lysyl-tRNA synthetase signature 308 325 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Mepo1g04674 578 PRINTS Lysyl-tRNA synthetase signature 290 303 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Mepo1g04674 578 PRINTS Lysyl-tRNA synthetase signature 441 457 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Mepo1g04674 578 PRINTS Lysyl-tRNA synthetase signature 261 277 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Mepo1g04674 578 PRINTS Lysyl-tRNA synthetase signature 245 255 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Mepo1g04674 578 SUPERFAMILY Class II aaRS and biotin synthetases 208 574 IPR045864 -
Mepo1g04674 578 Pfam tRNA synthetases class II (D, K and N) 210 574 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04674 Mepo-Chr1 54559581 54568759 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04674 K04567 - gmx:100787720 1004.59