Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04576 ATGATGGCTGCGTTGAGTAACGGAAGTCCATGGACAAAGCTCGCTACACCATCTCTTCCATTTCCATTTCTTCATCACTCTTACACTTCTTACACTTCACGAATCTTTTCCTTTCGACGCAAATTCTCTGTTAATGCTCTTTCGCAACAACAATCCCTTCCCGTTCGTGTTCGTTTCGCTCCTTCTCCTACTGGTAACCTTCATGTTGGTGGTGCCAGAACTGCCCTCTTCAACTACTTGTTTGCTAGGTCCAAAGGTGGGAAGTTTGTCTTGAGAATTGAGGACACTGATTTGGAGAGGTCTACTAGGGAATCTGAGGAGGCAGTGCTTAGAGATCTTACTTGGCTTGGCCTTGATTGGGATGAAGGGCCCGGTGTTGGTGGAGATTATGGTCCATATAGACAATCTGAGAGGAATTCTATGTACAAACAATATGCTGAGAAACTCCTTCAATCCGGTCAAGTTTATCGCTGCTTCTGTTCTAATGAGGAACTAGAGAAAATGAAGGTGGATGCTAAACGAAAAAATTTGCCTCCAGTATACACAGGTAAATGGGCCAATGCAACAGATGCGGAAGTAGAAGAAGAGCTGGCAAAAGGAACTCCACATACATTCCGGTTTCGTGTCCCCAAAGGAAGTTTAAAAATTACTGACTTAATACGAGGCGAGGTTAGTTGGAATTTGGATACACTTGGAGATTTTGTGATAATGAGGAGTAACGGTCAGCCAGTTTATAACTTTTGTGTGACGGTTGATGATGCTACCATGGCTATTTCTCATGTCATCAGAGCAGAGGAGCATTTACCAAACACTCTAAGGCAGGCATTAATATACAAGGCACTAGAATTTCCCATGCCTCATTTTGCACACGTTTCCTTGATTTTAGCTCCTGATCGGAGTAAATTATCTAAGCGACATGGAGCAACATCAGTTGGTCAGTACAGGGAAATGGGATACCTACCTGAGGCAATGAATAACTACCTAGCATTATTAGGCTGGGGCGATGGGACCGAAAATGAGTTCTTCACCCTTGATAAACTTGTTGAAAGATTCACTATTGAACGTGTGAACAAAAGTGGTGCTGTTTTTGATTCCACAAAGTTAAGGTGGATGAATGGTCAGCATTTAAGAGCACGTCCATCAGAGGAGGTGACCAAACTTATCGGAGAGCGTTGGAAGACATCTGACTTCCTCACAATATCAGAAGGGCCCTTTGTTGAAGAATTAATAAACCTACTTAAGGATGGGATTGACTTGATAACTGATGCAGACAACGTACTCTCTAACTTGCTTTCTTATCCTCTACATTCTACTTTGCAAAGTGAAGAAGCAGAACCTGCCATACAAGATAATCTTCCTGAGTTTTGTGCCAGCTTCTTGGCTGCCTATGATAGCGGTGATCTTGTAGGTGCACTGGAAGAAGGCCAAGCTAGCTGGAAAAATTGGGTCAAAGGCTTCGGCAAATCAACTAAGCGCAAGGGAAAATCACTCTTCATGCCGCTTCGGCTCCTACTGACTGGAAAACTCCACGGACCAGATATTGGGGCTGCTGTTGTCTTGCTTTATCAAGCTGGGACTACTGGTGTCATAGCTCCTGAAGTTAGCTTTGTGACAATTGATGAAAGAGTTGAAATCCTTAGACAAATTAATTGGGAAACACTGTCCAAAGATCATGTTGTGAAGGAGACTGCTTCTACTGTCTAA 1704 0.4325 MMAALSNGSPWTKLATPSLPFPFLHHSYTSYTSRIFSFRRKFSVNALSQQQSLPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTRESEEAVLRDLTWLGLDWDEGPGVGGDYGPYRQSERNSMYKQYAEKLLQSGQVYRCFCSNEELEKMKVDAKRKNLPPVYTGKWANATDAEVEEELAKGTPHTFRFRVPKGSLKITDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALEFPMPHFAHVSLILAPDRSKLSKRHGATSVGQYREMGYLPEAMNNYLALLGWGDGTENEFFTLDKLVERFTIERVNKSGAVFDSTKLRWMNGQHLRARPSEEVTKLIGERWKTSDFLTISEGPFVEELINLLKDGIDLITDADNVLSNLLSYPLHSTLQSEEAEPAIQDNLPEFCASFLAAYDSGDLVGALEEGQASWKNWVKGFGKSTKRKGKSLFMPLRLLLTGKLHGPDIGAAVVLLYQAGTTGVIAPEVSFVTIDERVEILRQINWETLSKDHVVKETASTV 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04576 567 PANTHER GLUTAMATE--TRNA LIGASE 40 546 - -
Mepo1g04576 567 Hamap Glutamate--tRNA ligase [gltX]. 54 543 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Mepo1g04576 567 NCBIfam glutamate--tRNA ligase 55 522 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Mepo1g04576 567 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 61 72 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Mepo1g04576 567 Pfam tRNA synthetases class I (E and Q), catalytic domain 55 370 IPR020058 GO:0004812|GO:0005524|GO:0043039
Mepo1g04576 567 CDD GluRS_core 55 377 IPR033910 GO:0006424|GO:0008270
Mepo1g04576 567 SUPERFAMILY Nucleotidylyl transferase 55 363 - -
Mepo1g04576 567 Gene3D HUPs 45 379 IPR014729 -
Mepo1g04576 567 Pfam Anticodon binding domain 403 521 IPR045462 -
Mepo1g04576 567 Gene3D - 436 529 IPR020751 -
Mepo1g04576 567 FunFam Glutamate--tRNA ligase chloroplastic/mitochondrial 437 530 - -
Mepo1g04576 567 PRINTS Glutamyl-tRNA synthetase signature 72 83 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Mepo1g04576 567 PRINTS Glutamyl-tRNA synthetase signature 87 100 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Mepo1g04576 567 PRINTS Glutamyl-tRNA synthetase signature 243 253 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Mepo1g04576 567 PRINTS Glutamyl-tRNA synthetase signature 259 267 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Mepo1g04576 567 PRINTS Glutamyl-tRNA synthetase signature 58 70 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Mepo1g04576 567 FunFam Glutamate--tRNA ligase, mitochondrial 48 379 - -
Mepo1g04576 567 SUPERFAMILY An anticodon-binding domain of class I aminoacyl-tRNA synthetases 364 522 IPR008925 GO:0000049
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04576 Mepo-Chr1 53543902 53549919 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04576 K01885 - gmx:100810730 929.858