Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04563 ATGCAAGGATTCATTGCTCTTGTTTTGATTCTTGGTTTTGTTTCACCTTGTCTATGTACAAGGTTGAAGGTTGGAACCGAAAATGCAATTTATAATGTGATACAATATGGTGCGCGTGGCGATGGCAAAACTGATGATTCACAAGCATTTGTTAGTGCATTTAACAGTGCATGTAAAGCATCAGGGATATCAAAACTAATAATACCAGCCGGAAAAACATACATGGTGTCGAAAGCAAATTTTAGTGGTCCTTGCAGCGCCAAAGTATTCGTCCAGCTTGAAGGGCAAATAGTTGCACCTTCTAGAGCAGCCTCGAAATCTAAGTTATATTGGATTAGCGTCGAACATGTAGACGAACTCACAATTGATGGCAATAACAAAGGAGGTTTTCATGGAAGTGGTCCTACTTGGTGGCAATGCCCAACTTGTGATCGACCTAAGATGTTGTTTTTCCATTCCTGCAATGGTCTCACCGTTAGAAATTTGAGGATCTTGAATAGCCCAAGATCTCATGTTTCTGTTACTATGTGCAATCATTCAACATTTTCTCATATATCTATTAATTCTGCTGCTACTAGCCCCAACACTGATGGGTTTGACATTTCTCATTCTAATAATATCTTGATAGAAAATTCTAAGATAAGATCTGGTGATGATTGTATTGCGTTTAACGATGGCTCCTTTTTTATTAATGTTACTCGAGTTACTTGCGGACCAGGCCATGGAATAAGTATTGGCAGCCTTGGAAGAAATAGATCAAATGATCAAGTTTCTGATATTCATATACGTAACTGTACCTTCATTGAGACTACAAATGGAGCAAGAATCAAGACGGTTCCGGGTGGATCAGGTTATGCAAAACGGATTACATTTGAGCAAATCATCCTTGGTAATGTTAAGAACCCAATAATTATAGACCAAGGGTACAAAATTAGTCCACAGGATACATCTGTGAGGGTGAGTTCTGTGACATATCGAGGATTTACTGGAACTTCTGCTAGCAAGATAGCCGTTAATTTAAATTGTAGCTCCCCTGGTTGTTTCGACATTCTATTGGATCAAAATAACATTGTAGCTCCTCAAGCAGGAAAAAAGACTTCATTTTTTTGTAGAAATGCTCATGGAACAGTTAGAAATACTTTTCCAAATGTCTCTTGTCTATCTAATTAA 1170 0.3803 MQGFIALVLILGFVSPCLCTRLKVGTENAIYNVIQYGARGDGKTDDSQAFVSAFNSACKASGISKLIIPAGKTYMVSKANFSGPCSAKVFVQLEGQIVAPSRAASKSKLYWISVEHVDELTIDGNNKGGFHGSGPTWWQCPTCDRPKMLFFHSCNGLTVRNLRILNSPRSHVSVTMCNHSTFSHISINSAATSPNTDGFDISHSNNILIENSKIRSGDDCIAFNDGSFFINVTRVTCGPGHGISIGSLGRNRSNDQVSDIHIRNCTFIETTNGARIKTVPGGSGYAKRITFEQIILGNVKNPIIIDQGYKISPQDTSVRVSSVTYRGFTGTSASKIAVNLNCSSPGCFDILLDQNNIVAPQAGKKTSFFCRNAHGTVRNTFPNVSCLSN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04563 389 Gene3D - 17 386 IPR012334 -
Mepo1g04563 389 PANTHER - 29 375 - -
Mepo1g04563 389 SUPERFAMILY Pectin lyase-like 23 387 IPR011050 -
Mepo1g04563 389 SMART pbh1 204 225 IPR006626 -
Mepo1g04563 389 SMART pbh1 154 203 IPR006626 -
Mepo1g04563 389 SMART pbh1 257 278 IPR006626 -
Mepo1g04563 389 ProSitePatterns Polygalacturonase active site. 234 247 IPR000743 GO:0004650|GO:0005975
Mepo1g04563 389 Pfam Glycosyl hydrolases family 28 58 374 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04563 Mepo-Chr1 53446448 53450456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04563 1 375 Glycoside Hydrolase AT5G27530 44.041 4.24e-96 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04563 K01184 - mtr:25500200 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g04563 1 53446448 53450456 Mepo1g04563 1 53446448 53450456 ECH