Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03953 ATGATCCATACCCAGTTCATGAAATCTGGTTTTAAACATGATGTATTTGCTTCAACTGCTTTGCTTGATATGTACGCTAAATTGGGTTGTTTGAAATTTGCACGCAATGTGTTTGACGAAATGTCTGTGAGAGAGTTGGCTACGTGGAATGCGATGATGGCGGGGTGCACGAGGTTTGGTGACATGGAAAGAGCGTTGGAATTGTTTTGGTTGATGCCTTCGAGGAATGTGGTATCGTGGACTACTATGGTATCTGGTTATTCGCAGAATAAGCAATATGAGAAGGCTTTGGGGTTGTTTTTGAGGATGGAAAGGGAGAAAGATGTGAGTCCGAATGAAGTTACGTTGGCGAGTATTTTGCCGGCTTGTGCGAATCTTGGGGCACTTGAGATTGGGCAGAGGGTTGAAGTATATGCGAGGAAAAATGGGTTTTTTAAGAATTTGTTTGTGAGCAATGCGGTGTTGGAGATGTATGCAAAATGTGGGAAGATTGATGTTGCTTGGAAGGTGTTTGATGAGATAGGTAGATTCAGAAATCTGTGCTCTTGGAATTCGATGATCATGGGTTTGGCTGTTCATGGACAATGTCACAAGGCCATTCAGCTTTATGATCAAATGTTGAGAGAAGGAACTTTGCCTGATGACGTGACATTCGTGGGGCTTCTCTTGGCATGCACACATGGAGGCATGGTTGAAAAAGGAAAGCGTATATTCCAGTCAATGACAAGAGACTTCAACATTATTCCCAAACTAGAACACTATGGCTGCATGGTTGATCTACTTGGTCGTGCCGGGCGATTAACAGAAGCTTACGAGGTCATAAAAAGAATGCCAATGAAGCCAGACTCGGTAATATGGGGTACTTTGTTGGGGGCTTGCAGTTTCCATGGTAATGTTGAATTGGCTGAGGTAGCAGCTGAGTCTTTATTTGCACTTGAGCCTTGGAATCCAGGAAATTACGTCATTCTTTCGAACATTTATGCATCCGCTGGGAAATGGGACGGAGTTGCAAAGCTCAGAAAGGTGATGAAGGGAAGCAAAATTACAAAAACAGCTGGACATAGCTTCGTTGAAGAGGGAGGTCAACTGCATAAGTTCATTGTGGAGGATAGATCACATTCAGAAAGTAGCGAAATTTTTGCTTTGCTTAATGGAGTTTATGAAATAATAAAGTTTAATAAAAATGAATATGAATGGTATTTAGATTTAGATTTGAACAACTAG 1224 0.4175 MIHTQFMKSGFKHDVFASTALLDMYAKLGCLKFARNVFDEMSVRELATWNAMMAGCTRFGDMERALELFWLMPSRNVVSWTTMVSGYSQNKQYEKALGLFLRMEREKDVSPNEVTLASILPACANLGALEIGQRVEVYARKNGFFKNLFVSNAVLEMYAKCGKIDVAWKVFDEIGRFRNLCSWNSMIMGLAVHGQCHKAIQLYDQMLREGTLPDDVTFVGLLLACTHGGMVEKGKRIFQSMTRDFNIIPKLEHYGCMVDLLGRAGRLTEAYEVIKRMPMKPDSVIWGTLLGACSFHGNVELAEVAAESLFALEPWNPGNYVILSNIYASAGKWDGVAKLRKVMKGSKITKTAGHSFVEEGGQLHKFIVEDRSHSESSEIFALLNGVYEIIKFNKNEYEWYLDLDLNN 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03953 407 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 151 381 - -
Mepo1g03953 407 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 72 IPR046960 GO:0003723|GO:0009451
Mepo1g03953 407 Pfam PPR repeat family 75 124 IPR002885 -
Mepo1g03953 407 Pfam PPR repeat family 179 225 IPR002885 -
Mepo1g03953 407 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Mepo1g03953 407 Gene3D Tetratricopeptide repeat domain 137 242 IPR011990 GO:0005515
Mepo1g03953 407 Pfam PPR repeat 152 175 IPR002885 -
Mepo1g03953 407 Pfam PPR repeat 19 42 IPR002885 -
Mepo1g03953 407 Pfam PPR repeat 253 278 IPR002885 -
Mepo1g03953 407 Gene3D Tetratricopeptide repeat domain 243 312 IPR011990 GO:0005515
Mepo1g03953 407 Gene3D Tetratricopeptide repeat domain 1 136 IPR011990 GO:0005515
Mepo1g03953 407 SUPERFAMILY TPR-like 48 215 IPR011990 GO:0005515
Mepo1g03953 407 FunFam Pentatricopeptide repeat-containing protein chloroplastic 1 147 - -
Mepo1g03953 407 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 45 79 IPR002885 -
Mepo1g03953 407 NCBIfam pentatricopeptide repeat 48 78 IPR002885 -
Mepo1g03953 407 NCBIfam pentatricopeptide repeat 254 277 IPR002885 -
Mepo1g03953 407 NCBIfam pentatricopeptide repeat 182 214 IPR002885 -
Mepo1g03953 407 NCBIfam pentatricopeptide repeat 78 113 IPR002885 -
Mepo1g03953 407 Pfam E motif 296 358 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03953 Mepo-Chr1 45871616 45873473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03953 51 391 Glycoside Hydrolase AT3G49170 41.520 9.58e-84 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03953 - - gmx:100790321 684.1