Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03571 ATGCTTAACTTTTTACATAAAAATCTTCCCTTTCAAGCTCTTTCCGTGTTCAAGAACCAAACCCAGTTTCCTTTTCTTCAAAATATCGACGAGGTAACACTTGCCTTGTCGTTCAAGGCATGTCGGGGTGAGTTTAAATTGGGTGCCCAGATTCATGGATTTGTTGTGGCTACTCGGTTTGTTTCACGTGTTACTGTGTCAAATTCGTTGATGAAAATGTACTGTAAAGCTGGGAGATTTGAATGTGCTTTGCGTGTTTTTGAGGGTTTGAGTTGTCCTGATATTGTTTCGTGGAATACCGTTCTTTCTGGGTTTGAGAAGAGTGTTGATGCTTTGAACTTCGCATGTTTTATGCATTTGAATGGGGTGGTTTTTGATCCTGTGACGTATACTACTGCTCTTTCGTTTTGTTGGGATAGGGATTATTGGGATGATCATGGGTTTTTGTTTGGGTTGCAGTTGCATTCTCTTGTGGTTAAATGTGGATTTGGTTGTGAAGTTTTTATAGGGAATGCACTTGTGACAATGTATTCGAGGTGGGGGGGATTAGTAGAGGCGGGGAGAGTTTTTGATGAAATGACTATAAGAGATTTGGTTTCTTGGAATGCGATGCTTTCGGGGTATGCTCAAGAGGGGGAGTGTTATGGGTTGGAAGCTGTTTTGTTGTTTTTCAACATGGTGAGAGAAGGGATGTTGCTTGACCATGTTTCGTTAACGGGTGCGATTTCTGCTTGTGGTTATACGAGAAACTTGGAGTTTGGGAAGCAGATTCATGGTTTGGCTCAAAAATTGGGTTATGGAACACATGTTGCAGTTTGCAATGTTTTGATTTCGACTTATTCAAAATGTAAGGTTCTTAGAGATGCGAAGGCGGTTTTTCAAGATATGAGTGCTCGCAATGTAGTATCTTGGACGACACAGATTTCTATTGACGAAGAGAATGTGGTGTCTCTCTTTAATGCTATGAGAGTTGACGGTGTTTATCCAAACGATGTTACATTTATAGGATTATTGCATGCTATAACAATCAGGAATATGGTGAAAGAAGGTCTAATGGTTCATGGGTTATGCATAAAAAGTTGCTTTTCATCTGAACAAAATGTCTCCAATAGCCTAATTACCATGTATGCTAAGTTTGAGTCCATTCAAGAATCAAAGAAGATTTTTGAGGAGCTTAACTATCAAGGAACAATATCATGGAATGCGTTAATTTCAGGGTATGCTCAAAATGGCTTGTGTAAAGAAGCTTTCCTTACATTTTTATCTGCAATAAAGGAGATAAAGCCCAACCAATACACATTTGGTAGTGTATTAAATGCCATTGCTGCAGCTGAAGATATATCTTTGAAACACGGGCAGCGTTGCCATTCTCACTTGATCAAACTTGGTTTAAACACTGACCCATTTGTTGCAGGGGCTCTGCTTGACATGTATGGCAAGCGTGGAAACATTAACGAGTCTCAAAGAGTATTCAACGAGACACCTGAAAAGACCCAGTTTTCTTGGACGGGAATGATATCTGCCTATGCCCGCCATGGAGACTACGAGTCAGTGATGAGTTTATATAAGGAAATTGAGAGGGAAGGAAGCAATCTTGATTCCATCACTTTCCTATCTGTTTTAGCTGCATGTTGTAGGAAAGGTATGGTTGATGTAGGCCATAGGATATTTAACTCTATGGTGAATAAACATTCAATTGAACCAACCCCTGAGCATTATTCAATTATGGTAGACATGTTTGGCCGTGTGGGACGGCTAGATGAGGCGGAAGAGTTGATGCATCAGATTCCAGGCGGACCTGGACTGTCAGTATTACAAAGCTTGCTTGGGTCTTGTAAATTACATGGGAATGTAGAGATGGCAGAGAGGGTCGTTGATAGTTTAATACAAATGGACCCTGGAAGTTCAGGTCCATATGTGTTGATGGCAAACTTGTATGCCGAGAAAGGGAATTGGGAGAAAGTTGCTGAAGTGAGAAAAGGGATGAGAGGGAGGGGAGTAAAGAAGGAAGTGGGATTCAGTTGGGTGGATGTTGCTAATGTTGATTCCTTGCATTTGCATGGTTTCTCATCTGGCGACAAGTCACACCCAGAGTCTGAGACTATTGATAGAATGGCAGAGTTTTTGGGATTGCAAATGATATTTTCAAAAGAGAGTAGAGGGGTGGAAGGTGATTGGCATCGAGAGTTTGAACTAGTGAGCCATGGATAG 2211 0.4102 MLNFLHKNLPFQALSVFKNQTQFPFLQNIDEVTLALSFKACRGEFKLGAQIHGFVVATRFVSRVTVSNSLMKMYCKAGRFECALRVFEGLSCPDIVSWNTVLSGFEKSVDALNFACFMHLNGVVFDPVTYTTALSFCWDRDYWDDHGFLFGLQLHSLVVKCGFGCEVFIGNALVTMYSRWGGLVEAGRVFDEMTIRDLVSWNAMLSGYAQEGECYGLEAVLLFFNMVREGMLLDHVSLTGAISACGYTRNLEFGKQIHGLAQKLGYGTHVAVCNVLISTYSKCKVLRDAKAVFQDMSARNVVSWTTQISIDEENVVSLFNAMRVDGVYPNDVTFIGLLHAITIRNMVKEGLMVHGLCIKSCFSSEQNVSNSLITMYAKFESIQESKKIFEELNYQGTISWNALISGYAQNGLCKEAFLTFLSAIKEIKPNQYTFGSVLNAIAAAEDISLKHGQRCHSHLIKLGLNTDPFVAGALLDMYGKRGNINESQRVFNETPEKTQFSWTGMISAYARHGDYESVMSLYKEIEREGSNLDSITFLSVLAACCRKGMVDVGHRIFNSMVNKHSIEPTPEHYSIMVDMFGRVGRLDEAEELMHQIPGGPGLSVLQSLLGSCKLHGNVEMAERVVDSLIQMDPGSSGPYVLMANLYAEKGNWEKVAEVRKGMRGRGVKKEVGFSWVDVANVDSLHLHGFSSGDKSHPESETIDRMAEFLGLQMIFSKESRGVEGDWHREFELVSHG 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03571 736 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 568 IPR002885 -
Mepo1g03571 736 Gene3D Tetratricopeptide repeat domain 146 253 IPR011990 GO:0005515
Mepo1g03571 736 Pfam E motif 615 677 IPR046848 -
Mepo1g03571 736 FunFam Pentatricopeptide repeat-containing protein mitochondrial 250 364 - -
Mepo1g03571 736 Gene3D Tetratricopeptide repeat domain 254 355 IPR011990 GO:0005515
Mepo1g03571 736 Gene3D Tetratricopeptide repeat domain 359 458 IPR011990 GO:0005515
Mepo1g03571 736 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 151 249 - -
Mepo1g03571 736 NCBIfam pentatricopeptide repeat 500 533 IPR002885 -
Mepo1g03571 736 NCBIfam pentatricopeptide repeat 68 88 IPR002885 -
Mepo1g03571 736 NCBIfam pentatricopeptide repeat 272 302 IPR002885 -
Mepo1g03571 736 NCBIfam pentatricopeptide repeat 535 569 IPR002885 -
Mepo1g03571 736 FunFam Pentatricopeptide repeat-containing protein mitochondrial 469 695 - -
Mepo1g03571 736 Pfam PPR repeat 199 230 IPR002885 -
Mepo1g03571 736 Pfam PPR repeat 171 194 IPR002885 -
Mepo1g03571 736 Pfam PPR repeat 370 392 IPR002885 -
Mepo1g03571 736 Pfam PPR repeat 272 300 IPR002885 -
Mepo1g03571 736 Pfam PPR repeat 572 595 IPR002885 -
Mepo1g03571 736 Pfam PPR repeat 398 420 IPR002885 -
Mepo1g03571 736 Pfam PPR repeat 68 88 IPR002885 -
Mepo1g03571 736 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 7 140 IPR046960 GO:0003723|GO:0009451
Mepo1g03571 736 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Mepo1g03571 736 FunFam Pentatricopeptide repeat-containing protein, mitochondrial isoform A 1 141 - -
Mepo1g03571 736 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Mepo1g03571 736 Pfam PPR repeat family 499 546 IPR002885 -
Mepo1g03571 736 Gene3D Tetratricopeptide repeat domain 473 685 IPR011990 GO:0005515
Mepo1g03571 736 Gene3D Tetratricopeptide repeat domain 7 145 IPR011990 GO:0005515
Mepo1g03571 736 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 233 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03571 Mepo-Chr1 41572033 41574243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03571 26 702 Glycoside Hydrolase AT3G49170 31.143 3.61e-106 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03571 - - cam:101513383 1284.63