Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03564 ATGTTCCAAACTTTCACTTGTTGCCTTACCTTTCTTCATAAGACCAAATCTCCCTCCAACCAACCAAAAAGACCATCCAACATCAAACTTTGTTCCATTTCTGATATATCAATCTCTTCTTTCATTCAAAACGAAGAATCTAGCCAATTTCGACAAATTTTCAAGCTTATCGACACCAACAACGACGGAAAGATTTCAACCACAGAGCTCAGTGAAGTGCTTTCATGTCTAGGATATAACAAATGCACAGCTGCTAAAGAAGCTGAGAGCATGATAAGAGTTTTGGACTTCAATGGAGATGGATTTGTAGATATTGATGAGTTCATGTTTGTCCTGAAAGAAGATGGAAACTATGGCAAAGGAGAAGAGCATGATCATGATGAGTACTTAATGGATGCTTTTCTTGTATTTGATATTGATAAGAATGGATTAATCTCACCTAAGGAATTGAGGAGAGTTTTGGTTAATCTTGGTTGTGAGAATTGTAGTTTAAGGGATTGTAAGCGTATGATTAAAGGGGTTGATAAGAATGGAGATGGGTTTGTAGATTTTGAAGAATTTCGATCTATGATGAAAATAGGACTTAAATTTAAATAG 597 0.3551 MFQTFTCCLTFLHKTKSPSNQPKRPSNIKLCSISDISISSFIQNEESSQFRQIFKLIDTNNDGKISTTELSEVLSCLGYNKCTAAKEAESMIRVLDFNGDGFVDIDEFMFVLKEDGNYGKGEEHDHDEYLMDAFLVFDIDKNGLISPKELRRVLVNLGCENCSLRDCKRMIKGVDKNGDGFVDFEEFRSMMKIGLKFK 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03564 198 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Mepo1g03564 198 Pfam EF-hand domain pair 49 110 IPR002048 GO:0005509
Mepo1g03564 198 Pfam EF-hand domain pair 128 192 IPR002048 GO:0005509
Mepo1g03564 198 ProSitePatterns EF-hand calcium-binding domain. 138 150 IPR018247 -
Mepo1g03564 198 CDD EFh 129 192 IPR002048 GO:0005509
Mepo1g03564 198 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 129 192 - -
Mepo1g03564 198 Gene3D - 118 196 - -
Mepo1g03564 198 Gene3D - 13 114 - -
Mepo1g03564 198 ProSitePatterns EF-hand calcium-binding domain. 58 70 IPR018247 -
Mepo1g03564 198 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
Mepo1g03564 198 SMART efh_1 166 194 IPR002048 GO:0005509
Mepo1g03564 198 SMART efh_1 129 157 IPR002048 GO:0005509
Mepo1g03564 198 SMART efh_1 49 77 IPR002048 GO:0005509
Mepo1g03564 198 SMART efh_1 87 115 IPR002048 GO:0005509
Mepo1g03564 198 SUPERFAMILY EF-hand 38 192 IPR011992 -
Mepo1g03564 198 ProSiteProfiles EF-hand calcium-binding domain profile. 162 197 IPR002048 GO:0005509
Mepo1g03564 198 ProSiteProfiles EF-hand calcium-binding domain profile. 45 80 IPR002048 GO:0005509
Mepo1g03564 198 CDD EFh 49 113 IPR002048 GO:0005509
Mepo1g03564 198 ProSiteProfiles EF-hand calcium-binding domain profile. 125 160 IPR002048 GO:0005509
Mepo1g03564 198 FunFam Calmodulin 1 39 194 - -
Mepo1g03564 198 ProSitePatterns EF-hand calcium-binding domain. 175 187 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03564 Mepo-Chr1 41432537 41433328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03564 50 193 EF-hand Containing Proteins AT1G66400 43.448 6.08e-33 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03564 - - tpra:123897853 306.605