Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02593 ATGTGTGATTTGAGCTTAAAGGGTTTCACATATATGTTTCTCATTGCAATTCTTATTTGGTCTTCAAATTTTGAAGAGTGCATTGCAAGAAGAGGAAAGCATTGGAGGCATAATAGAGAAGAGATAGCTTCTTTGTTGAAGAAGAAAGGAAAGAATCATGGCAATGGACACAACCACAATGGCGGAGGATCAAAATCAAAGTCTCCTCCACCACAAAAAAGCATTCCCTCACTCTCACCACCACTACCTCCACAAGAAGAAGTTACACCTTCAACTCCACCACCACAAACTTACATTGGTGGGTCCTCTACCACTTTTAATGTGCTAGATTTTGGAGCTAAAGGAGATGGAAGAAGTGATGATACAAAGGCATTTGAAGCCACATGGGGTGCAGCATGTAAAGTAGAGGCATCAACCATGCTCATTCCAGCAGATTACACTTTCTACGTGGGGCCCATTGTTTTTTCGGGCCCATACTGCAAACCCAGAATCGTTTTCCAGGTTGATGGAACCATTATTGCACCAACAAACTCCAATGCTTGGGGCAGAGGACTATTACAGTGGTTGGACTTTACAAAACTGGTTGGATTTACTATTCAAGGAAATGGCATTATTGATGGAAGAGGTTCAGTATGGTGGCAAGACACTCAGTATAATGATCCTCTAGATGATGAAGAAAAACTCTTGGTCCCTCTAAACAGCACAATTGGGAGCCCACCAATGCAGATTGAAAGTTCACTTGGAGGAAAAATGCCAAGCATCAAACCAACTGCAATAAGGTTCTATGGAAGTATTAATCCAACAGTCACAGGCATAACAATTCAAAATAGTCCACAATGCCATCTCAAGTTTGACAACTGTAATGGAGTCTTGGTCCATGATGTGACCATATCATCTCCTGGCGATAGTCCTAACACTGACGGAATTCACTTACAGAACTCGAGAGATGTATTGATATACAAAAGCACTATGGCTTGCGGAGATGATTGTATTTCCATACAAACTGGATGCTCAAACGTATACGTACATAATGTTGACTGCGGACCAGGGCATGGAATCAGCATTGGAGGTCTAGGAAAGGATAATACTAGAGCATGTGTCTCAAACATCACTGTCAGGGATGTCAACATGCATAACACAATGAATGGTGTCAGAATCAAAACATGGCAGGGTGGATCAGGTTCAGTACAAGGAGTACTATTCTCAAACATACAAGTTTCACAGGTTCAAGTTCCGATAATAATCGATCAATTCTACTGCGATAAAAGAAACTGCAAAAATCAAACAGCAGCTGTGGCTCTCACAGGAATCAACTATGAAGGTATAAAGGGGACATACACTGTTAAGCCGGTTCACTTTGCATGCAGTGATAGCTTGCCTTGTATAGATGTTTCTTTAACAAGTGTTGAGTTACAACCTGTTCAAGATAAATACCATCTTTATGATCCATTCTGTTGGGAGACATATGGTGAACTGAAAACTACTACTGTTCCACCTATTGATTGTCTGCAAATCGGGAAGCCGCCGAATAATCGGATTCAGACAGCTCACGATTTATGCTGA 1563 0.4127 MCDLSLKGFTYMFLIAILIWSSNFEECIARRGKHWRHNREEIASLLKKKGKNHGNGHNHNGGGSKSKSPPPQKSIPSLSPPLPPQEEVTPSTPPPQTYIGGSSTTFNVLDFGAKGDGRSDDTKAFEATWGAACKVEASTMLIPADYTFYVGPIVFSGPYCKPRIVFQVDGTIIAPTNSNAWGRGLLQWLDFTKLVGFTIQGNGIIDGRGSVWWQDTQYNDPLDDEEKLLVPLNSTIGSPPMQIESSLGGKMPSIKPTAIRFYGSINPTVTGITIQNSPQCHLKFDNCNGVLVHDVTISSPGDSPNTDGIHLQNSRDVLIYKSTMACGDDCISIQTGCSNVYVHNVDCGPGHGISIGGLGKDNTRACVSNITVRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSQVQVPIIIDQFYCDKRNCKNQTAAVALTGINYEGIKGTYTVKPVHFACSDSLPCIDVSLTSVELQPVQDKYHLYDPFCWETYGELKTTTVPPIDCLQIGKPPNNRIQTAHDLC 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02593 520 MobiDBLite consensus disorder prediction 57 72 - -
Mepo1g02593 520 PANTHER - 104 490 - -
Mepo1g02593 520 MobiDBLite consensus disorder prediction 49 101 - -
Mepo1g02593 520 SUPERFAMILY Pectin lyase-like 103 518 IPR011050 -
Mepo1g02593 520 SMART pbh1 194 215 IPR006626 -
Mepo1g02593 520 SMART pbh1 314 335 IPR006626 -
Mepo1g02593 520 SMART pbh1 287 313 IPR006626 -
Mepo1g02593 520 SMART pbh1 396 417 IPR006626 -
Mepo1g02593 520 SMART pbh1 367 388 IPR006626 -
Mepo1g02593 520 SMART pbh1 337 357 IPR006626 -
Mepo1g02593 520 MobiDBLite consensus disorder prediction 73 91 - -
Mepo1g02593 520 Gene3D - 95 508 IPR012334 -
Mepo1g02593 520 FunFam polygalacturonase At1g48100 94 505 - -
Mepo1g02593 520 Pfam Glycosyl hydrolases family 28 135 217 IPR000743 GO:0004650|GO:0005975
Mepo1g02593 520 Pfam Glycosyl hydrolases family 28 254 472 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02593 Mepo-Chr1 27360731 27365085 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02593 4 520 Glycoside Hydrolase AT1G60590 64.353 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02593 - - gmx:732602 831.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g02593 1 27360731 27365085 Mepo1g02593 1 27360731 27365085 ECH