Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02477 ATGGCTCTCTCTAGTTGCATCCTTAAACCAAACCACTCTCTTCTTCAATGCCACCAATTCAAAGCTCCAAATCCAAACCATGGTTTCAGAAACCAGTTCTGTGTGATGGCTTCATCAAGCAGTGATGGAGAGAGGACTGTTATAAGAAAAGAACAAGAGGAATGGAAGATCAATTTCTCAGCTGAAAAACCAGCAACACCATTGTTGGATACTGTTAATTATCCAGCTCATATGAAGAATCTGACCACACAGGATCTGGAACAATTGGCTGCTGAATTGAGGGCTGACATTGTACACAGTGTGTCAGACACTGGTGGGCATCTTAGCTCAAGCTTGGGAGTGGTGGAGTTATCAGTTGCTCTTCATCATGTTTTCGACACTCCAGATGACAAGATCATATGGGATGTTGGCCATCAGGCATATCCCCACAAGATTCTTACAGGTAGAAGGTCGAGGATGCATACCATTAGGAAGACATCAGGACTAGCTGGTTTTCCCAAAAGGGATGAGAGTGTTCATGATGCTTTTGGGGTAGGCCACAGTTCCACAAGTATATCAGCTGGTCTTGGTATGGCAGTTGCAAGGGATCTGTTGGGAAAGAAGAACAGTGTGATTTCAGTGATTGGAGATGGTGCAATGACTGCCGGCCAAGCTTACGAGGCCTTGAACAATGCAGGATTCATTGATTCTAACTTGATAGTTATTCTGAATGACAACAAGCAAGTTTCTTTGCCAACTGCAACACTTGATGGCCCTGCAACACCAGTTGGAGCCCTAAGTAGTACTTTAAGCAAAATTCAAGCAAGCAGAAAATTTCGCAAACTTAGAGAAGCCACGAAAGTAAGTCCCTTTAGACCCCTATATTACTCAAAAACTTCAATACCCTTTTGGAATGTGACTCTAATTTATCTTCTACAGAACATCACAAAGCAAATAGGAGGACAAACACACCTAGTTGCATCAAAAGTTGATAAGTATGCAAGAGATTTCATTAGTGGTTCTGGTTCTTCACTCTTTGAGGAGCTTGGTATGTACTACATTGGTCCTATGGATGGTCATAACATTGAAGATTTAGTCAACATATTGGAGAAAGTGAAAGCAATGCCAGCTCCAGGTCCAGTTTTGATTCATATTGTTACAGAGAAAGGAAAGGGATACCCTCCAGCTCTTGCAGCAGCTGATAGAATGCATGGTGTTGTCAAGTTTGATCCAAAAACAGGCCACCAGTTCAAGCCAAAACCCTCTACACTTGCATACACACAGTACTTTGCTGAATCATTGATAAAGGAAGCTGAAACTGACAGTAAGATAGTAGCAATACATGCAGCAATGGGTGGTGGAACTGGCCTAAATTACTTCCAGAAAAGGTTTCCAGACCGATGTTTCGATGTCGGCATAGCTGAACAACATGCTGTTACATTTGCAGCAGGGTTAGCCGCTGAAGGTCTCAAGCCATTTTGTGCTATTTATTCATCGTTCCTACAACGCGGATATGATCAGGTAGTCCATGATGTTGATCTTCAAAAACTACCTGTTCGATTTGCGATGGATAGAGCTGGTTTAGTTGGTGCAGATGGACCAACCCATTGTGGAGCATTTGATATCACCTTCATGGCTTGCTTGCCCAACATGATTGTCATGGCTCCTTCTGATGAGGCTGAACTGATGAACATGGTTGCAACTGCAGCAGCTATAGATGATAGACCAAGTTGCTTTAGATTTCCAAGAGGAAATGGAATTGGAGCCAATCTTCCTCTCAATAACAAAGGAACCCCGCTTGAGATTGGAAAAGGCAGAATTCTGCTTGAAGGAAGCAGAGTTGCGATTTTGGGATATGGTTGTATGGTTCAGCAATGCATGAAAGCAGCAGAAATGCTTAGAGCAGTAGGGGTTTATGTGACAGTTGCTGATGCTAGGTTTTGCAAACCTTTGGATACTGATCTCATTAGGCTACTGGCTAGAGAGCATGAAATACTGATCACAGTGGAAGAGGGTTCCATTGGAGGTTTTGGATCACATGTTTCTCAATTCTTAAGCTTAGCTGGTCTCCTTGATGGACCACTTAAGCTGAGATCAATGATGCTTCCTGATAGGTACATTGACCATGGAGCACCCAATGATCAGATTGATGAAGCAGGTCTTTCATCAAAGCATATTCTAGCTACAGTCCTCTCTCTTTTGGATATGCCAAAAGAAGCTCTTTTGTTTAAATGA 2214 0.4264 MALSSCILKPNHSLLQCHQFKAPNPNHGFRNQFCVMASSSSDGERTVIRKEQEEWKINFSAEKPATPLLDTVNYPAHMKNLTTQDLEQLAAELRADIVHSVSDTGGHLSSSLGVVELSVALHHVFDTPDDKIIWDVGHQAYPHKILTGRRSRMHTIRKTSGLAGFPKRDESVHDAFGVGHSSTSISAGLGMAVARDLLGKKNSVISVIGDGAMTAGQAYEALNNAGFIDSNLIVILNDNKQVSLPTATLDGPATPVGALSSTLSKIQASRKFRKLREATKVSPFRPLYYSKTSIPFWNVTLIYLLQNITKQIGGQTHLVASKVDKYARDFISGSGSSLFEELGMYYIGPMDGHNIEDLVNILEKVKAMPAPGPVLIHIVTEKGKGYPPALAAADRMHGVVKFDPKTGHQFKPKPSTLAYTQYFAESLIKEAETDSKIVAIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMACLPNMIVMAPSDEAELMNMVATAAAIDDRPSCFRFPRGNGIGANLPLNNKGTPLEIGKGRILLEGSRVAILGYGCMVQQCMKAAEMLRAVGVYVTVADARFCKPLDTDLIRLLAREHEILITVEEGSIGGFGSHVSQFLSLAGLLDGPLKLRSMMLPDRYIDHGAPNDQIDEAGLSSKHILATVLSLLDMPKEALLFK 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02477 737 Pfam Transketolase, C-terminal domain 596 719 IPR033248 -
Mepo1g02477 737 ProSitePatterns Transketolase signature 2. 523 539 IPR020826 -
Mepo1g02477 737 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 416 584 - -
Mepo1g02477 737 Gene3D - 417 584 - -
Mepo1g02477 737 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 69 380 IPR005477 GO:0008661|GO:0016114
Mepo1g02477 737 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 414 605 IPR029061 -
Mepo1g02477 737 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 68 728 IPR005477 GO:0008661|GO:0016114
Mepo1g02477 737 CDD TPP_PYR_DXS_TK_like 423 576 - -
Mepo1g02477 737 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 596 728 - -
Mepo1g02477 737 SUPERFAMILY TK C-terminal domain-like 591 728 IPR009014 GO:0003824
Mepo1g02477 737 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 66 479 IPR029061 -
Mepo1g02477 737 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 71 726 IPR005477 GO:0008661|GO:0016114
Mepo1g02477 737 Gene3D - 60 389 - -
Mepo1g02477 737 SMART Transket_pyr_3 417 582 IPR005475 -
Mepo1g02477 737 CDD TPP_DXS 105 386 IPR005477 GO:0008661|GO:0016114
Mepo1g02477 737 Gene3D - 596 729 IPR009014 GO:0003824
Mepo1g02477 737 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 32 734 IPR005477 GO:0008661|GO:0016114
Mepo1g02477 737 ProSitePatterns Transketolase signature 1. 94 113 IPR005474 -
Mepo1g02477 737 Pfam Transketolase, pyrimidine binding domain 416 578 IPR005475 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02477 Mepo-Chr1 25939008 25943628 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02477 432 675 Acyl Lipid Metabolism Gene Families AT3G13450 24.345 8.27e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02477 K01662 - gmx:100798930 1197.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g02477 1 25939008 25943628 Mepo1g02477 1 25939008 25943628 ECH