Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02004 ATGGCTAGAATTCTAAAACCATCCAAGTGGTTCTCTAACAAATTAGGTCTCAAGCTTATTAGATCAAGATCTTCAAATTCATCATCATTATGCTCTCCAAGATCTCCAATTTCATTGTCTACCACACCAAAAACTAACAACAAGGAAGATGAAAAAGGATTAAGAGAGGTTTTTAAGTACTTTGATGGTGATGGAGATGGAAAAATTTCAGCCTATGAATTAAGGTCATATTTTGGTTCAATTGGTGAGCATATGTCTCATGAGGAAGCTGAAAGGGTGATAAATTACCTCGATGCCGACGGCGACAGCTTGTTGGATTTCAATGATTTTATTAAGTTGATGAAAGGTGAAGGAGGAAGTGATGATGATAAAGATTTAAGAAAGGCTTTTGAGATGTTTGTGTGGGAGGAGAAAGAAGGTTGTATTACTCCAAAAGGGTTGCAAAGGATGTTGCAACGTCTTGGAGATGATAGGTCTTATGAAGAGTGTGTGGTTATGATTGATGCATTTGATATTGATCATAATGGGGTTCTTGATTTCAACGAGTTTCATCAAATGATGGCTTAA 567 0.3651 MARILKPSKWFSNKLGLKLIRSRSSNSSSLCSPRSPISLSTTPKTNNKEDEKGLREVFKYFDGDGDGKISAYELRSYFGSIGEHMSHEEAERVINYLDADGDSLLDFNDFIKLMKGEGGSDDDKDLRKAFEMFVWEEKEGCITPKGLQRMLQRLGDDRSYEECVVMIDAFDIDHNGVLDFNEFHQMMA 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02004 188 FunFam Calmodulin-2 A 44 188 - -
Mepo1g02004 188 CDD EFh 54 115 IPR002048 GO:0005509
Mepo1g02004 188 MobiDBLite consensus disorder prediction 22 44 - -
Mepo1g02004 188 Gene3D - 35 118 - -
Mepo1g02004 188 CDD EFh 125 188 IPR002048 GO:0005509
Mepo1g02004 188 ProSitePatterns EF-hand calcium-binding domain. 171 183 IPR018247 -
Mepo1g02004 188 Pfam EF-hand domain pair 53 115 IPR002048 GO:0005509
Mepo1g02004 188 Gene3D - 119 188 - -
Mepo1g02004 188 PANTHER CALCIUM BINDING PROTEIN 47 114 - -
Mepo1g02004 188 ProSitePatterns EF-hand calcium-binding domain. 62 74 IPR018247 -
Mepo1g02004 188 ProSiteProfiles EF-hand calcium-binding domain profile. 158 188 IPR002048 GO:0005509
Mepo1g02004 188 Pfam EF-hand domain pair 140 187 IPR002048 GO:0005509
Mepo1g02004 188 MobiDBLite consensus disorder prediction 22 50 - -
Mepo1g02004 188 ProSiteProfiles EF-hand calcium-binding domain profile. 85 120 IPR002048 GO:0005509
Mepo1g02004 188 SUPERFAMILY EF-hand 39 187 IPR011992 -
Mepo1g02004 188 ProSiteProfiles EF-hand calcium-binding domain profile. 49 84 IPR002048 GO:0005509
Mepo1g02004 188 SMART efh_1 53 81 IPR002048 GO:0005509
Mepo1g02004 188 SMART efh_1 89 117 IPR002048 GO:0005509
Mepo1g02004 188 SMART efh_1 162 188 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02004 Mepo-Chr1 20603520 20604483 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02004 6 188 EF-hand Containing Proteins AT3G50770 53.266 1.32e-59 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02004 K13448 - gmx:100306370 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g02004 1 20603520 20604483 Mepo1g02004 1 20603520 20604483 ECH