Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3945 ATGAATCGCCAAAAATCAATCCTCTCCTTCTTCCACAAAACCTCGCTGGAAAATCGAACTTCCGCCGCCGCACAAACCTCCGCTCCGTCGACTCAACAACCCTACCGCGACGATCGTAATGTCAAACCAGTCTTCGATCCACCACCGCCGCCGTCAGATGACGTCAGAGGAACTGAGACTCCGCCGGAGAAAGTGCCGCGTCAGATTTTACCGGCGAACTTCGGGACAAACGCGAAGAACTCCGGTTCGTGTTTGTTTGAGAGTATCATGCATAAGTTTATCAAGGTTGATGATGGCGAAAAAGTTAATCAGAGGACCCAGTCATCAAATCATGATAGTGCCCCCAAACCGTCTCCATCATCAGGTATATTTACTGATCCTAACCACAACACACTGCAAAGAGAAGCCGCAGCAGCAGCAGCAGTTTTTGAACCTGTGGTCAAAGCGAAAGATAAAGCTGTAAATTTTAAGGAAAAGGTTAATCATGAAAATATGTTCAGGAGCCAGTCATCAAATCGTGATAGCTTCCCCAAATCGTCAACACCATCAGCTATATTTACTGATACTAACCGGAAAGGACTGCAGAAAGAAGCAGCAGTTTTTGAACCTGTGGTGAAAGCGAAAGATACTGCTGTAAATTTCAAAGAAAATGTTAACCATGAAAACATGTTCCTGTTTAAAAATGATGATGATATTACTGGACCAGAAACCCCAGGAATGGAGCCTCTTACTTCTAATGTAAAGCGAAAACTAGAGGATGTGTCCAAGCTTTCTTCCTTGCGGGATTCTGGCAAACGAGTCAGATTCCTTGATGATTCAATGTCACTGGACATGACTAAGAAGGAGTTAGAAGTAGCTAGCAAGTTTGAGTGGCTTGATCCTTCTCGAATCAGGGATGCAAATGGAAGAAGGCCCGATGATCCGTTATACGACAGGACTACACTTTATATACCTCCAGAGGTTTTCAAAAAAATGTCAGCATCGCAGAAACAGTATTGGAGTGTCAAATGCAAATATATGGATGTTTTGCTGTTCTTTAAAGTGGGAAAATTTTATGAGCTTTATGAAATGGATGCTGAAATTGGTCATAAGGAGCTTGATTGGAAAATAACATTAAGTGGTGTGGGAAAATGCCGGCAGGTTGGTATATCTGAAAGTGGGATTGATGATGCTGTTAAAAACCTGGTTGCTCGTGGATATAAGGTTGGGCGAGTGGAGCAATTGGAGACGTCTGAAGAAGCAAAAGCTAGAGGAGCTAATTCTGTTATTCAAAGAAAATTAGTTCAGGTAGTAACCCCATCAACCAATGTGGATGGTAATATTGGCCCTGACGCAAATCATCTTCTTGCAATAAAAGAGGAAAGCAATGGCTCGGATAATGGTTCAGTTGCATATGGATTTGCTTTTGTTGATTGTGCTCGTCTTAGGCTATGGGTTGGCTCTATTGATGATGACGCGTCCTGTTCTGCTTTGGGGGCTTTATTGATGCAAGTGTCACCCAAGGAAATTATATATGAACGCAGAGGGGTGTCCAAAGAAGCTGAGAAAGCATTTAGAAAATTCTCTTTAAATGGTTCCACAACACTACAATTGACTCCTATGCGGTCGATCACTGACTTGGTGAACTCAGAAATTAGTGATTTAATTCACTCGAAGGGATACTTTAAGGGTTCTTCTAATTCACTGGATCATGTGCTGACCAAAGTGATTCATCGTGAAATCACTTTGTCTGCTCTTGGTGGACTGATAAATCATCTAAATAGATTGATGCTAGATGAGATCCTACAGAACGGGGACATATATCCGTACCAGGTTTATAAGGGTTGCCTCAAAATGGATGGTCCAACATATATAAATCTAGAAATCTTTGGAAATAGTGAGGATGGTGGAAAATCAGGTACACTATACAAGTACCTTGATAACTGCGTTACTTCATCTGGAAAGCGGCTTCTTAGGAACTGGATCTGCTGTCCATTGAAAGATGCTGAAGGAATTAATAACAGGCTTGATGTGGTAGATCATCTAATAGCTTGCCCTGAAATTGTGTCTCATATTGCACAACATCTTCGCAAGCTTCCAGATTTGGAACTATTACTTGGCCGAACTAAGTCCAGCCTTAAAGTATCAAGCCCTATCTTACTTCCCTTGTTGGTAAAGAAAATATTGAAACAGAGGGTGAAAGTGTTTGGGTCACTTGTGAAAGGCCTTCGGACTACTGTGAGTTTGTTGCTTCTACTACAGAAAGAGCAGCCTCTAATGTCATCATTGACCAAAGTTTTTAAACTTCCAGTTCTTACTGGCAGTGATGGGCTCAATCAATTTCTTACTCAGTTTGAAGCAGCTGTGGATAGTGATTTCCCAAATTACCAAAATCATGATGTTACAGATACAGATGCCGAAACACTCACAATCCTTGCTGAACTATTTTTGGAGAAAGCTACTCAATGGTTTGAAGTTGTTCACGCCATCAATTGCATTGATGTACTAAGATCTTTTGCTGTTACTTCTAGCTTTTCATGTGGTACTATGTCTAGGCCTGTCATAGTGCCAACATCAAAAAGTACAAGTAAAGATAGTGGAGCTCCTGTGCTCAAAATGAAGGGACTATGGCATCCATTTGCCCTTGGAGAGAGTGGACGTGAGCCTGTTCCAAATGACATGATCCTCGGCGAGAATGAAGACGGGCATCATCCTCGCACGTTGCTTTTGACAGGGCCAAACATGGGTGGAAAATCAACACTTTTGCGTGCTACCTGTCTAGCTGTTATTATGGCCCAGTTAGGCTGCTATGTGCCGTGTGAAAATTGTGTTCTTTCAGTTGTGGATATCATCTTCACACGCCTTGGAGCCACAGATAGAATCATGGCTGGCGAGAGTACCTTCTTTATTGAGTGTACAGAAACTGCTTCAGTGCTTCATAATGCTACTCAAGATTCTCTTGTTATCCTTGATGAATTGGGTCGGGGAACAAGCACTTTTGATGGCTATGCCATTGCATATGCTGTATTCCGGCATCTGATTGAAAAGGTGAACTGTCGCTTGCTATTCGCAACACATTACCATCCACTAACAAAAGAGTTTGCCTCTCATCCGCGTGTTACAATGCAACACATGGCCTGTGCTTTCAAGTCAAAATCTGATACCTTTTCCAAACAAGATCAGGAGCTAGTCTTCCTATATCGTCTTGCCTCTGGAGCATGTCCCGAAAGCTACGGATTGCAGGTCGCCCTCATTGCTGGAATCCCAGAAAAAACTGTGAACATTGCTTCAAAGGCAAGCCAACAGATGAAAAAATCAATTGGAAAAAACTTTAGGTCAAGTGAACAGAGATCAGAGTTTTCAACTCTTCATGAAGAATGGTTGAAGACCTTGATGTCTATCGCAAGAATAGAGGATGTTGAATCTTTTGATGATGATGTTTTAGATACATTAGTCTGTTTGCGGTATGAACTTAAAACTTCGTTTAAATCGGGTAACTAG 3480 0.4198 MNRQKSILSFFHKTSLENRTSAAAQTSAPSTQQPYRDDRNVKPVFDPPPPPSDDVRGTETPPEKVPRQILPANFGTNAKNSGSCLFESIMHKFIKVDDGEKVNQRTQSSNHDSAPKPSPSSGIFTDPNHNTLQREAAAAAAVFEPVVKAKDKAVNFKEKVNHENMFRSQSSNRDSFPKSSTPSAIFTDTNRKGLQKEAAVFEPVVKAKDTAVNFKENVNHENMFLFKNDDDITGPETPGMEPLTSNVKRKLEDVSKLSSLRDSGKRVRFLDDSMSLDMTKKELEVASKFEWLDPSRIRDANGRRPDDPLYDRTTLYIPPEVFKKMSASQKQYWSVKCKYMDVLLFFKVGKFYELYEMDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVKNLVARGYKVGRVEQLETSEEAKARGANSVIQRKLVQVVTPSTNVDGNIGPDANHLLAIKEESNGSDNGSVAYGFAFVDCARLRLWVGSIDDDASCSALGALLMQVSPKEIIYERRGVSKEAEKAFRKFSLNGSTTLQLTPMRSITDLVNSEISDLIHSKGYFKGSSNSLDHVLTKVIHREITLSALGGLINHLNRLMLDEILQNGDIYPYQVYKGCLKMDGPTYINLEIFGNSEDGGKSGTLYKYLDNCVTSSGKRLLRNWICCPLKDAEGINNRLDVVDHLIACPEIVSHIAQHLRKLPDLELLLGRTKSSLKVSSPILLPLLVKKILKQRVKVFGSLVKGLRTTVSLLLLLQKEQPLMSSLTKVFKLPVLTGSDGLNQFLTQFEAAVDSDFPNYQNHDVTDTDAETLTILAELFLEKATQWFEVVHAINCIDVLRSFAVTSSFSCGTMSRPVIVPTSKSTSKDSGAPVLKMKGLWHPFALGESGREPVPNDMILGENEDGHHPRTLLLTGPNMGGKSTLLRATCLAVIMAQLGCYVPCENCVLSVVDIIFTRLGATDRIMAGESTFFIECTETASVLHNATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFATHYHPLTKEFASHPRVTMQHMACAFKSKSDTFSKQDQELVFLYRLASGACPESYGLQVALIAGIPEKTVNIASKASQQMKKSIGKNFRSSEQRSEFSTLHEEWLKTLMSIARIEDVESFDDDVLDTLVCLRYELKTSFKSGN* 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3945 1159 SMART DNAend 630 877 IPR007696 GO:0005524|GO:0006298|GO:0030983
Mal8g3945 1159 Pfam MutS domain I 328 438 IPR007695 GO:0005524|GO:0006298|GO:0030983
Mal8g3945 1159 Pfam MutS domain III 616 833 IPR007696 GO:0005524|GO:0006298|GO:0030983
Mal8g3945 1159 Gene3D MutS, connector domain 445 611 IPR036678 GO:0005524|GO:0006298|GO:0030983
Mal8g3945 1159 Gene3D - 612 839 - -
Mal8g3945 1159 SUPERFAMILY DNA repair protein MutS, domain I 314 435 IPR016151 GO:0005524|GO:0006298|GO:0030983
Mal8g3945 1159 Gene3D - 855 1142 IPR027417 -
Mal8g3945 1159 CDD ABC_MSH6_euk 865 1089 - -
Mal8g3945 1159 MobiDBLite consensus disorder prediction 106 128 - -
Mal8g3945 1159 PIRSF Msh6 1 794 IPR017261 GO:0006298|GO:0030983
Mal8g3945 1159 PIRSF Msh6 788 1142 IPR017261 GO:0006298|GO:0030983
Mal8g3945 1159 MobiDBLite consensus disorder prediction 16 37 - -
Mal8g3945 1159 MobiDBLite consensus disorder prediction 100 128 - -
Mal8g3945 1159 SMART mutATP5 898 1094 IPR000432 GO:0005524|GO:0006298|GO:0030983
Mal8g3945 1159 MobiDBLite consensus disorder prediction 16 77 - -
Mal8g3945 1159 PANTHER DNA MISMATCH REPAIR PROTEIN MSH7 309 1151 - -
Mal8g3945 1159 SUPERFAMILY DNA repair protein MutS, domain II 444 625 IPR036678 GO:0005524|GO:0006298|GO:0030983
Mal8g3945 1159 ProSitePatterns DNA mismatch repair proteins mutS family signature. 979 995 IPR000432 GO:0005524|GO:0006298|GO:0030983
Mal8g3945 1159 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 309 1151 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Mal8g3945 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 860 1098 IPR027417 -
Mal8g3945 1159 SUPERFAMILY DNA repair protein MutS, domain III 613 837 IPR036187 -
Mal8g3945 1159 MobiDBLite consensus disorder prediction 164 186 - -
Mal8g3945 1159 Pfam MutS domain V 902 1096 IPR000432 GO:0005524|GO:0006298|GO:0030983
Mal8g3945 1159 MobiDBLite consensus disorder prediction 165 186 - -
Mal8g3945 1159 Gene3D DNA repair protein MutS, domain I 284 444 IPR016151 GO:0005524|GO:0006298|GO:0030983
Mal8g3945 1159 Pfam MutS domain II 446 592 IPR007860 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3945 Mal-Chr8 114123950 114131771 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3945 K08737 - gmx:100818859 1639.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g3945 8 114123950 114131771 Mal8g3945 8 114123950 114131771 ECH