Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3859 ATGAGGTCTTCTTCTTCTTCTTCTACATCGGGTGAAATCAACATCGCCATGAGTGCTCAGAAGCTTGACGTTGATAATCGAATTTCTCTTCGATTCTATTATCGGATTGCTGATAATATACTTCGACAGGCTGACATCTTTCGCGCAGAGAGGAATGTTATTGACCTATACGTCATGCTTTTAAGATTTTCTAGTTTGGTATCTGAGACCATACCACGTCACCGGGAGTATAGGTCATCTCCATCAACCACGAAACAATCATTGAGAAAGAGATTGTTGATTTCTGTGAATGAACTGGAGAAGTTGAAACCGTTGGTCCAGCAGAAGATCAATGAGCTTAACAGCAGAAATGCTCACCAACAAAATGGCCGGGGAAATTTTCATTCAAATAATTCGGTGGATATTTCTCCTGTGAAAAAGCAAACTTTGCCTCGTAATGGCCAAATAAAGGCAGTCAGAGCAACTGCTAAGGAGTTTGTTTACCAAGGATCAAGTGGCCAACAGTTCACTTATGTCAGACCTGTGGAAGAGCAAGTACGAAGACTATCTCTAACTCTGCCACCTCCAAAGCAAGAAACTCTGTCTAGACATTCTATCCTTGGTCCCAATGGGCTTAATGGGCAGTGGCGGCCACCTACTACTGGTACAGGGGTCAGGTATCCAACCAACATTGATCTGTCTCCAGTTGAACTACCAAGCCTACAACGTCCCTTGGAAGATGAATCTCTGAATAATAAAGATAATAGCATTGAAGAACTCCATAAATTAGATTTAAATTCAATTCCTACCGAGAGTGAAGACAGCCAGCCCCAGCGTGCTCAGGAATCTCCTTCTCTTATCTCTTTTGAAGAAACAGAAACCTCTGCTCCAGTAGAACTTATCAGACAACCTTCTCCTCCACCCGTACTTGCTCAAGTGCAAGATTTAGTGTCACCTCATGTTAATGAGGCAGGATGTAAGACAGAGATTCCATCATCTGATAGTTGTGTTCATGCCGAGTCTCCTCTGCAACTGCACATTTCAACTGCTTTGATGGAGAACTTTATGAAGCTTGCCAAGTCAAATACTAAGAAAAATTTGGAAACTTGTGGCGTCCTTGCTGGTTTGCTTAAAAACAGAAAGTTTTATATTACTGCTCTAATAATCCCCAAGCAGGAGTCAACGTCGGATTCTTGTCAGACTATAAATGAAGAGGAAATATTTGAAGTGCAGGATAAGCGATCACTTTTCCCTCTTGGGTGGATTCATACACATCCTACTCAATCTTGTTTCATGTCATCAATTGATCTGCACACCCATTACTCATATCAGATTATGCTGCCAGAGTCTGTTGCAATAGTCATGGCGCCGACGGATAGTTCAAGAAAACATGGCATTTTTCGACTGACAACCCCCGGTGGAATGTCTGTTATTAAACAATGTGATCAACGCGGCTTCCATCCACATAATCAACCTCCAGATGGTGGTCCTATTTACAATACATGTACAGATGTTTACATGAATCCAGATTTAAAATTTGAAGTCATTGATCTTCGGTGA 1539 0.4172 MRSSSSSSTSGEINIAMSAQKLDVDNRISLRFYYRIADNILRQADIFRAERNVIDLYVMLLRFSSLVSETIPRHREYRSSPSTTKQSLRKRLLISVNELEKLKPLVQQKINELNSRNAHQQNGRGNFHSNNSVDISPVKKQTLPRNGQIKAVRATAKEFVYQGSSGQQFTYVRPVEEQVRRLSLTLPPPKQETLSRHSILGPNGLNGQWRPPTTGTGVRYPTNIDLSPVELPSLQRPLEDESLNNKDNSIEELHKLDLNSIPTESEDSQPQRAQESPSLISFEETETSAPVELIRQPSPPPVLAQVQDLVSPHVNEAGCKTEIPSSDSCVHAESPLQLHISTALMENFMKLAKSNTKKNLETCGVLAGLLKNRKFYITALIIPKQESTSDSCQTINEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDLHTHYSYQIMLPESVAIVMAPTDSSRKHGIFRLTTPGGMSVIKQCDQRGFHPHNQPPDGGPIYNTCTDVYMNPDLKFEVIDLR* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3859 512 ProSiteProfiles MPN domain profile. 338 468 IPR037518 -
Mal8g3859 512 Gene3D - 6 132 - -
Mal8g3859 512 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 1 512 - -
Mal8g3859 512 Coils Coil 96 116 - -
Mal8g3859 512 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 335 441 IPR000555 GO:0005515|GO:0008233|GO:0008237
Mal8g3859 512 Gene3D Cytidine Deaminase, domain 2 321 512 - -
Mal8g3859 512 PANTHER AMSH-LIKE PROTEASE 1 512 - -
Mal8g3859 512 CDD MPN_AMSH_like 337 512 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Mal8g3859 512 Pfam USP8 dimerisation domain 18 104 IPR015063 -
Mal8g3859 512 SUPERFAMILY USP8 N-terminal domain-like 27 124 - -
Mal8g3859 512 SUPERFAMILY JAB1/MPN domain 337 468 - -
Mal8g3859 512 MobiDBLite consensus disorder prediction 118 139 - -
Mal8g3859 512 MobiDBLite consensus disorder prediction 188 224 - -
Mal8g3859 512 SMART pad1_6 337 465 IPR000555 GO:0005515|GO:0008233|GO:0008237
Mal8g3859 512 MobiDBLite consensus disorder prediction 188 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3859 Mal-Chr8 112276714 112283716 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3859 K11866 - gmx:100804754 843.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g3859 8 112276714 112283716 Mal8g3859 8 112276714 112283716 ECH