Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g3484 ATGGCTGGACCATCCAAGGTGATTCACATTCGCAATGTTGGGCATGAAATTTCTGAAAATGATTTGCTTCAGCTTTTTCAGCCTTTTGGAGTCATAACAAAGCTTGTGATGTTGCGTGCCAAAAATCAGGCCCTTCTCCAAATGCAAGATATTCCTTCTGCAGTTAGTGCTATACAATTTTATGCAAATGCTCAACCAAGCATAAGGGGGAAAAATGTTTATGCCCAGTTTTCCTCTCATCAAGAAATAGGGAGAATTAATCAAAGTCAAGGGCGAGAAGATGAGCCAAATCGGATTCTCTTAGTTACAATTCATCAAGTGTTGTTTCCTATGACTGTGGATGTACTACAACAAGTATTCTCTCCCCATGGATATGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTGGCTTTCAAGCTCTCATCCAGTATGAAACTCGTCAGAGTGCCGTGACTGCCAGAGGTGCACTTCAGGGACGCAATGTTTATGATGGTTGCTGTCAGCTGGACATTCAGTTCTCGAACCTGGATGAACTACAAGTGAACTACAATAATGATCGATCAAGGGACTTTACCAACCCAAATCTGCCCACAGAGCAGAAAGGCCGATCTTCACAATCTGGATATGGCGGCGATGCAGGAACGTATGCAGGGATTCAAGGTTCTGGACCCAGACAAGCTGGATTCTCACAGATGGGCAATGCTCAAGCGATTGAAGCTGCCTTCGGGGGAGAATTGCCTCCTGGAATAACTGGAACAAATGAAAGGTGTACAATTCTTGTCACAAATCTCAATCCTGATAGAATCGATGAGAGTAAGCTGTTCAACCTGTTCTCTCTCTATGGGAACATTGTCAGAATCAAACTTCTCCGAAGTAAACCAGATCATGCACTTGTCCAGATGGGAGATGGTTTCCAAGCTGAATTGGCAGTACACTTTCTGAAGGGAGCTATGTTGTTCGGAAAGCATTTGGAGTTGAACTTCTCAAAGCATCCAAACATAACCCCAGGTGTTGATACATATGAATTTAAGAACTCAAATCTCAATCGGTTCAATCACAATGCTGCCAAAAACTATCGGTATTGCTGCTCACCGACAAGGATTATACACATGTCCTCGCTCCCCCAAGATATTATTGAAGAGGAGCTTGCAAGTCTTTTGCAGGAGCATGGTATCATTGTCAACTGCAAAGTTTTTGAAATGAATGGGAGAAAGCAGGCTCTTGTTCAGTTTGAGAGCGAGGAGGAGGCAACTGAAGCCCTTGTTTGCAAGCATGCAAATTCACTTTCCGGCTTCGTGGTCCGCATCTCCTTTTCGCAATTGCAAAATATATTATGA 1338 0.432 MAGPSKVIHIRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDIPSAVSAIQFYANAQPSIRGKNVYAQFSSHQEIGRINQSQGREDEPNRILLVTIHQVLFPMTVDVLQQVFSPHGYVEKIVTFQKSAGFQALIQYETRQSAVTARGALQGRNVYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRSSQSGYGGDAGTYAGIQGSGPRQAGFSQMGNAQAIEAAFGGELPPGITGTNERCTILVTNLNPDRIDESKLFNLFSLYGNIVRIKLLRSKPDHALVQMGDGFQAELAVHFLKGAMLFGKHLELNFSKHPNITPGVDTYEFKNSNLNRFNHNAAKNYRYCCSPTRIIHMSSLPQDIIEEELASLLQEHGIIVNCKVFEMNGRKQALVQFESEEEATEALVCKHANSLSGFVVRISFSQLQNIL* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g3484 445 Gene3D - 254 351 IPR012677 -
Mal8g3484 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 331 IPR000504 GO:0003723
Mal8g3484 445 MobiDBLite consensus disorder prediction 185 211 - -
Mal8g3484 445 SUPERFAMILY RNA-binding domain, RBD 96 197 IPR035979 GO:0003676
Mal8g3484 445 Gene3D - 354 445 IPR012677 -
Mal8g3484 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 343 - -
Mal8g3484 445 TIGRFAM hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family 4 440 IPR006536 GO:0003723|GO:0005634|GO:0006397
Mal8g3484 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 367 441 IPR000504 GO:0003723
Mal8g3484 445 SUPERFAMILY RNA-binding domain, RBD 256 440 IPR035979 GO:0003676
Mal8g3484 445 SUPERFAMILY RNA-binding domain, RBD 3 91 IPR035979 GO:0003676
Mal8g3484 445 Gene3D - 99 201 IPR012677 -
Mal8g3484 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Mal8g3484 445 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 443 - -
Mal8g3484 445 MobiDBLite consensus disorder prediction 185 217 - -
Mal8g3484 445 SMART rrm1_1 368 437 IPR000504 GO:0003723
Mal8g3484 445 SMART rrm1_1 7 76 IPR000504 GO:0003723
Mal8g3484 445 SMART rrm1_1 258 327 IPR000504 GO:0003723
Mal8g3484 445 SMART rrm1_1 101 170 IPR000504 GO:0003723
Mal8g3484 445 Gene3D - 2 98 IPR012677 -
Mal8g3484 445 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 443 - -
Mal8g3484 445 Pfam RRM-like domain 97 174 IPR021790 -
Mal8g3484 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 371 433 IPR000504 GO:0003723
Mal8g3484 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g3484 Mal-Chr8 99042520 99050718 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g3484 K14948 - gmx:100798234 749.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g3484 8 99042520 99050718 Mal1g2174 1 28677925 28683208 PCT