Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2440 ATGTCAAGTGGTGGTGGATGCAGCATAGTTTGGTTCAGAAGAGATCTGAGAGTAGAGGATAATCCTGCACTAGCTGCAGGTGTAAGAGCAGGTGCTGTAGTTGGTGTTTTTATATGGGCACCTGAAGAAGAAGGACAATATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAAAATAGTTTGGTTCATCTTGATTCATCTTTGAGAAATCTTGGTACTCCTCTTGTTACCAAAAGATCAACTGATAGTGTTTCTTCTTTGCTTGAAGTTGTTAAGTCCACTGGAGCCACTCAAATCTTCTTCAACCATTTATATGATCCATTGTCACTTGTAAGGGATCATAGAGCAAAGGAAATTCTAACAGCTCAAGGGATTACCGTACGATCGTTCAACTCAGATTTATTGTATGAACCATGGGATGTGAATGATGAAAATGGGCAACCATTCACAACTTTTGATTCTTTTTGGGAAAGATGCCTTAGCATGCCTTATGATCCACAAGCACCTCTTCTCCCACCTAAAAGAATTATTCCAGGTGATGTATCAAAGTGTCCTTCTGATACATTGGTGTTTGAAGACGATTTAGAGAAAGCTAGTAACGCACTTCTTGCTCGAGCATGGTCACCAGGGTGGAGTAACGCAAACAAGGCATTAACAACCTTCATAAACGGTCCACTGATCGAGTACTCGAAGAATCGAAGGAAAGCAGACAGCGCCACAACTTCATTTCTCTCTCCACATTTGCATTTCGGAGAAGTTAGTGTCAAGAAAGTATTCCATCTTGTCCGAATTAAACAAGTCTTTTGGGCGAACGAAGGAAACCAAGCCGGCGAAGAAAGTGTTAACTTGTTTCTAAAGTCAATTGGTCTTAGAGAGTATTCGAGGTACATTAGTTTCAACCACCCTTATAGTCATGAAAGGCCTCTACTTGGACACCTTAAGTTTTTCCCTTGGGTGGTGAATGAGGGATATTTTAAGGCATGGAGACAAGGAAGGACAGGTTACCCTTTGGTGGATGCTGGAATGAGAGAGTTGTGGGCAACTGGTTGGCTTCATGATCGAATACGAGTTGTGGTTTCGAGTTTCTTTGTTAAGGTTTTGCAGCTTCCTTGGAGATGGGGGATGAAATATTTTTGGGATACCCTTTTGGATGCTGATCTTGAGAGTGATGCTCTTGGTTGGCAGTATATATCTGGTACTCTACCTGATGGTCGTGAATTCGACAGAATCGATAATCCACAGTTTGAGGGATACAAATGTGATCCAAATGGAGAATATGTGCGACGTTGGCTTCCTGAACTTGCAAGATTACCAACCGAATGGATACATCATCCATGGAATGCACCAGAATCAGTACTCCAAGCTGCTGGTATTGAACTTGGCTCAAACTACCCTCTTCCAATTGTGGAAATAGATGCAGCAACATTGAGGCTCGAGGAAGCACTTATACAAATGTGGCAACTAGAAGCAGCTTCAAGAGCTGCAGCGGAAAACGGAACCGAAGAAGGTCTTGGAGACTCGGCTGAATCAACACCTATTGCTTTTCCTCAAGACATACAAATGGAGGAAAGACATGAACCTATTAGGAACAATCCACCTCACGGTACTCGGCGCTACCAGGATCAAATGGTACCAAGTATGACTTCTTCTAGAGTGAGAGTGGAAGAAGAAGAAACTTCTTCGGTTCGAAACTCGGCAGGAGACAGCAGAGCTGAAGTGCCAACAAATGCAAATGCAAGAGAGGCGGTGAACCAAGGAGCATTGCAGAATGGGAATAGAAATACTAGACAAAGGCATAATCCTACAACTACATTTTGGCTGAGAAGTGCAGCTGAAGATTCAACAGCAGAATCTTCAAGTAGTACTAGGAGAGAAAGAGATGGAGGTGTTGTTCCAGAGTGGTCGCCGACGGCTTCTAACTTCTCTGATCAATTTGTAGATGATGAAAATGGTATAGGAGCTACTTCTCCTTACTTGCAGAGGCATCCACAGTCTCACCAATTGATGAGTTGGACACGCCTACCTCAAACTGGATAA 2037 0.4296 MSSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVGVFIWAPEEEGQYYPGRVSRWWLKNSLVHLDSSLRNLGTPLVTKRSTDSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEILTAQGITVRSFNSDLLYEPWDVNDENGQPFTTFDSFWERCLSMPYDPQAPLLPPKRIIPGDVSKCPSDTLVFEDDLEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNQAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAATLRLEEALIQMWQLEAASRAAAENGTEEGLGDSAESTPIAFPQDIQMEERHEPIRNNPPHGTRRYQDQMVPSMTSSRVRVEEEETSSVRNSAGDSRAEVPTNANAREAVNQGALQNGNRNTRQRHNPTTTFWLRSAAEDSTAESSSSTRRERDGGVVPEWSPTASNFSDQFVDDENGIGATSPYLQRHPQSHQLMSWTRLPQTG* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2440 678 Pfam FAD binding domain of DNA photolyase 284 480 IPR005101 -
Mal8g2440 678 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 302 503 - -
Mal8g2440 678 MobiDBLite consensus disorder prediction 535 549 - -
Mal8g2440 678 Gene3D - 135 294 - -
Mal8g2440 678 PRINTS DNA photolyase signature 144 160 IPR002081 -
Mal8g2440 678 PRINTS DNA photolyase signature 392 406 IPR002081 -
Mal8g2440 678 PRINTS DNA photolyase signature 333 349 IPR002081 -
Mal8g2440 678 PRINTS DNA photolyase signature 353 371 IPR002081 -
Mal8g2440 678 PANTHER CRYPTOCHROME-1 5 600 - -
Mal8g2440 678 ProSitePatterns DNA photolyases class 1 signature 2. 353 372 IPR018394 -
Mal8g2440 678 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 8 179 IPR036155 -
Mal8g2440 678 MobiDBLite consensus disorder prediction 564 617 - -
Mal8g2440 678 ProSitePatterns DNA photolyases class 1 signature 1. 333 345 IPR018394 -
Mal8g2440 678 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 6 135 IPR006050 -
Mal8g2440 678 Pfam Blue/Ultraviolet sensing protein C terminal 512 623 IPR020978 -
Mal8g2440 678 PANTHER CRYPTOCHROME 5 600 IPR002081 -
Mal8g2440 678 MobiDBLite consensus disorder prediction 524 678 - -
Mal8g2440 678 MobiDBLite consensus disorder prediction 657 678 - -
Mal8g2440 678 Pfam DNA photolyase 8 164 IPR006050 -
Mal8g2440 678 Gene3D HUPs 9 207 IPR014729 -
Mal8g2440 678 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 7 482 IPR014134 GO:0009785|GO:0009882
Mal8g2440 678 Coils Coil 471 491 - -
Mal8g2440 678 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 193 489 IPR036134 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2440 Mal-Chr8 54231735 54237666 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2440 K12118 - gmx:100815428 1236.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g2440 8 54231735 54237666 Mal8g2440 8 54231735 54237666 ECH