Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2198 ATGAATCTTCATGCCATGGTTTCTTTACCTTCTATTGTAGTTGGTGTCACTTCAACTCTTAAACTCAACTCACAATTCAGAAAATACTCAACAACATCTTTTCCACTAGATAAGGGTCAAAGCATTTCATTACAGAAAAGCCACATATCCACACATTTGAATCCCAACAGGTGGTACCTTAATTTTCAAGAAGCACTTTCATCGGCAAAAGAGAGTGAAGAAGAAGTGGATTCATCTTTCTACATTCCCTTGTTACAACAATGCTTAGAAAATTATTCCTTTTCATCCACACAAATTATTCACTGCCACATAGTGAAAACAGGTAGCCATGAAGACCCTTTTTTATCAACATTTCTAGTCAACGTTTACGCCAAATGTGGTAACATGGAGTGTGCTCAAAGAGTATTTGATCACATGAACATAAGAAATGTTGTTGCTTGGACCAATTTAATGAAAGGTTATGTGCAAAACTCAATGCCGAAACATGCTATACATTTGTTTGAAGAGATGCTGTTACATTCAGAGTGTTACCCTTCAATTCACACTCTTGCTATAGCCCTTAATGCTTGTACATCTTTGCACTCTTTGAAGTTAGGAGAACAGTTACATGCTTACATAATCAAATACAATGTTGATTTTGACACAAGTATCGGCAACGCGCTTTGTAGTTTATATTCTAAATGTGGTGGTAGGTTGGAATATGGTCTAAAAGCATTTAGGAGAGTCAAGGAAAAGAATGTTATGTCTTGGACTGCAGCTATTTCTGCTTGCGGCGAAAACGGTGAAGCTGTGAAGGGTTTGAGAGTTTTTGTTGAGATGCTTTTAGATGAGGTGCACGTTCAGCCTAATGAGTACACTTTAGCAAGTGTTTTGAGTCAGTGTTGTGAGGTCAAGTGCTTAGAGCTTGGGATTCAGGTTCATGCTATGTGTACTAAATTAGGGTACGAGTCGAACCTACGCGTTCGGAATTCTTTATTGTATTTGCACATTAAATGTGGTTGTATTGTTGAGGCTCAAAGGTTGTTTAAAGGAATGGATGATGTCAGTTTGGTTACATGGAATACTATGATTGCTGGACATGCACAAATGATGGAGCTTTCAAAGGATAATCTTTCTGCATTCCAAAAAGGAAGTGAAGCACTCAACCTTTTCTTGAAATTGAATCGGTCCGGCATGAAACCTGATTCGTTTACCTTCTCAAGTGTGTTGAGTGTTTGCAGCCGAATGATGGCTTTAGAACAAGGCGAACAAATTCATGCTCGGACGATCAAAACCGGTTTCTTATCAGAGGTTGCCGTAGGTTCTTCTATGATTAATATGTATAACAAATGTGGAAGCATTGAGAGAGCAAGCAAAGTTTTTCTAGAAATGTCTATTAGAACAATGATAGTATGGACTTCCATGATTACTGGTTTTGCACAGCTTGGTTGGTCAAAACAAGCATTGAATCTTTTCGATGATATGAAACTTGTAGGAGTTAGACCAAACCAGATCACTTTTGTCGGTGTTTTATCGGCTTGTGGAAATGCTGGTATGATCGATGAAGCATTCAATTACTTTGAGATTATGCAAAAGGAGTATAAAATTAAACCTGTGATGGACCATTATGCTTGTTTAGTTGATATGTTAGTGAGGCTCAGTCGGCTGGAGGAAGCTTTCGATTTAATAAAGAAAATGTATTATGAAGCTAGTGAGTTTATCTGGTCAAATTTGATTGCTGGTTGTTTAAGCCAAGGGAATCTAGAATTGGGATGTGATGCTGCAGAAAAGTTACTAAGTCTCGAACCAAAAGATACCGAGACATACTCATTACTGTTGAATATGTACGTCTTGGCCGGGCGATTTGAAGATGTTTCTAGGGTGAAGAATATGATGAAAGAAGAGAAAGTTGAAAAGTTAAAAGATTGGAGCTGGATTAGCATCAAAGACAGAGTGTATTCATTTGAAACAAATGACATAGCACACATAGAAAGTTCACTAGTAAGTAAATCATTGGAGGATTTACTTGTGAAAGCAAAGAATCTTGGATATGAGATGTTAGAAAGTGTGGAAATAAGTGACAAAGAAGAGGAGGAAAAGACATCTTCCCCTACCATTTATCAGAGTGAGAAGCTAGCCATTACATTTGGGTTGGAGAATTTGCCAAATTCATCACCAATAAGAGTTGTTAAGAATACCTTAATGTGCAGGGATAGTCATAATTTTGTTAAGTACATCTCAACACTGACTAGTAGGGAAATCATTGTTAAAGATAGTAAGAAGCTACATAAATTTGTCAAAGGACAATGCTCTTGTGGGAATATTGGTGGTTTTCTCTGA 2319 0.3734 MNLHAMVSLPSIVVGVTSTLKLNSQFRKYSTTSFPLDKGQSISLQKSHISTHLNPNRWYLNFQEALSSAKESEEEVDSSFYIPLLQQCLENYSFSSTQIIHCHIVKTGSHEDPFLSTFLVNVYAKCGNMECAQRVFDHMNIRNVVAWTNLMKGYVQNSMPKHAIHLFEEMLLHSECYPSIHTLAIALNACTSLHSLKLGEQLHAYIIKYNVDFDTSIGNALCSLYSKCGGRLEYGLKAFRRVKEKNVMSWTAAISACGENGEAVKGLRVFVEMLLDEVHVQPNEYTLASVLSQCCEVKCLELGIQVHAMCTKLGYESNLRVRNSLLYLHIKCGCIVEAQRLFKGMDDVSLVTWNTMIAGHAQMMELSKDNLSAFQKGSEALNLFLKLNRSGMKPDSFTFSSVLSVCSRMMALEQGEQIHARTIKTGFLSEVAVGSSMINMYNKCGSIERASKVFLEMSIRTMIVWTSMITGFAQLGWSKQALNLFDDMKLVGVRPNQITFVGVLSACGNAGMIDEAFNYFEIMQKEYKIKPVMDHYACLVDMLVRLSRLEEAFDLIKKMYYEASEFIWSNLIAGCLSQGNLELGCDAAEKLLSLEPKDTETYSLLLNMYVLAGRFEDVSRVKNMMKEEKVEKLKDWSWISIKDRVYSFETNDIAHIESSLVSKSLEDLLVKAKNLGYEMLESVEISDKEEEEKTSSPTIYQSEKLAITFGLENLPNSSPIRVVKNTLMCRDSHNFVKYISTLTSREIIVKDSKKLHKFVKGQCSCGNIGGFL* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2198 772 Pfam DYW family of nucleic acid deaminases 683 767 IPR032867 GO:0008270
Mal8g2198 772 Pfam PPR repeat 536 559 IPR002885 -
Mal8g2198 772 Pfam PPR repeat 119 140 IPR002885 -
Mal8g2198 772 Pfam PPR repeat 435 457 IPR002885 -
Mal8g2198 772 Pfam PPR repeat 249 274 IPR002885 -
Mal8g2198 772 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 143 178 IPR002885 -
Mal8g2198 772 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 72 708 - -
Mal8g2198 772 Pfam E motif 580 639 IPR046848 -
Mal8g2198 772 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Mal8g2198 772 Pfam PPR repeat family 463 507 IPR002885 -
Mal8g2198 772 Pfam PPR repeat family 142 190 IPR002885 -
Mal8g2198 772 Pfam PPR repeat family 350 406 IPR002885 -
Mal8g2198 772 SUPERFAMILY TPR-like 510 617 IPR011990 GO:0005515
Mal8g2198 772 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 598 632 IPR002885 -
Mal8g2198 772 PANTHER OS01G0913400 PROTEIN-RELATED 72 708 - -
Mal8g2198 772 Gene3D Tetratricopeptide repeat domain 461 645 IPR011990 GO:0005515
Mal8g2198 772 Gene3D Tetratricopeptide repeat domain 196 299 IPR011990 GO:0005515
Mal8g2198 772 Gene3D Tetratricopeptide repeat domain 60 195 IPR011990 GO:0005515
Mal8g2198 772 TIGRFAM PPR: pentatricopeptide repeat domain 249 275 IPR002885 -
Mal8g2198 772 TIGRFAM PPR: pentatricopeptide repeat domain 601 631 IPR002885 -
Mal8g2198 772 TIGRFAM PPR: pentatricopeptide repeat domain 498 531 IPR002885 -
Mal8g2198 772 TIGRFAM PPR: pentatricopeptide repeat domain 463 496 IPR002885 -
Mal8g2198 772 TIGRFAM PPR: pentatricopeptide repeat domain 145 179 IPR002885 -
Mal8g2198 772 Gene3D Tetratricopeptide repeat domain 300 424 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2198 Mal-Chr8 46871754 46874900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2198 81 767 Glycoside Hydrolase AT3G49170 34.245 2.47e-133 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2198 - - mtr:MTR_5g067140 1329.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g2198 8 46871754 46874900 Mal8g2198 8 46871754 46874900 ECH