Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1390 ATGGCTACTCAAGAGGTTAATAAGCCTCTTTCACTTCCTCCATACCCTGAGATGATTATGAAGGCAATTGAAGCACTGAATGAACCAAATGGTTCAAACAAATCATCCATATCAAACCACATAGAATCAATCTATGGAGAATTACCAGAAGGCCATTCAATTGTTCTTGCAAATCACCTTAACCAGATGAAGGAAAACGGTGACCTTGTTTTTGCAAAGAACAACTACATGAAGCCTGATCCAAATGCACCACCAAAGAGAGGACGTGGAAGACCACCAAAGCCAAAAGATCCATTGGCTCCACCACCAGCTGCTGTTTTGTCCCCACCAAGGCCAAGAGGTCGTCCTCCAAAGGACCCTAATGCACCTCCAAAGACTCCTAAGGCTGCTTCAAGTGGAAGAGGAAGAGGAAGGCCAAAGAAGGTTGCTAGGACTGAGAATGTTTCAAATCCAAGTGGTGGAGATGGTGCTGCTTCTGCTGAGGTTGATGATGATGTTACTCCAAGTGTTGCTGCTGTTGCTGTTCCTAGTGGAAGAGGAAGGGGTAGACCTCCTAAGGTTAAGCCTCAGATGACTGAAGTTAGTGTTGAATCATAG 597 0.4506 MATQEVNKPLSLPPYPEMIMKAIEALNEPNGSNKSSISNHIESIYGELPEGHSIVLANHLNQMKENGDLVFAKNNYMKPDPNAPPKRGRGRPPKPKDPLAPPPAAVLSPPRPRGRPPKDPNAPPKTPKAASSGRGRGRPKKVARTENVSNPSGGDGAASAEVDDDVTPSVAAVAVPSGRGRGRPPKVKPQMTEVSVES* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1390 198 MobiDBLite consensus disorder prediction 73 198 - -
Mal8g1390 198 PRINTS AT-hook-like domain signature 108 119 IPR017956 GO:0003677
Mal8g1390 198 PRINTS AT-hook-like domain signature 86 96 IPR017956 GO:0003677
Mal8g1390 198 PRINTS AT-hook-like domain signature 176 186 IPR017956 GO:0003677
Mal8g1390 198 SMART h15plus2 9 75 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal8g1390 198 PRINTS High mobility group protein (HMGY) signature 101 112 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Mal8g1390 198 PRINTS High mobility group protein (HMGY) signature 84 96 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Mal8g1390 198 PRINTS High mobility group protein (HMGY) signature 112 123 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Mal8g1390 198 MobiDBLite consensus disorder prediction 95 124 - -
Mal8g1390 198 Gene3D - 8 89 IPR036388 -
Mal8g1390 198 Pfam linker histone H1 and H5 family 13 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal8g1390 198 PANTHER HMG-Y-RELATED PROTEIN A 1 194 IPR031059 GO:0003677|GO:0005634
Mal8g1390 198 PANTHER HISTONE H1 1 194 - -
Mal8g1390 198 SMART AT_hook_2 133 145 IPR017956 GO:0003677
Mal8g1390 198 SMART AT_hook_2 110 122 IPR017956 GO:0003677
Mal8g1390 198 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Mal8g1390 198 SMART AT_hook_2 178 190 IPR017956 GO:0003677
Mal8g1390 198 SUPERFAMILY "Winged helix" DNA-binding domain 8 87 IPR036390 -
Mal8g1390 198 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1390 Mal-Chr8 26389683 26390673 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1390 - - mtr:MTR_5g078330 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g1390 8 26389683 26390673 Mal2g3159 2 45051794 45052812 PCT