Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1170 ATGGAGGATACCGTCATCGGAAGAATGAATACGATACTTTCCGACGTAGTTCTCGACTGCGTGATGCCGTACATCCATGACCCAAAAGACCGAGACGCGGTTTCTCAGGTATGTAAGCGATGGTACGAGATCGATTCATCAACACGAAAACATCTGACAATTGCTTTATGTTATACCACCACGCCAGAGAGACTCCGACGAAGGTTTCCTCATCTGGAATCGTTGAAGCTGAAAGGGAAACCACGAGCGGCGATGTTTAACTTGATACCGGAGAATTGGGGAGGGTTTGTTAAACCTTGGATTAAAGAGATTGAGAATTATTTTGATTGTTTGAAGAGTTTGCATTTTCGGAGAATGATTGTTACTGATGCTGATCTTTTGCTTCTTGCCAAATCCAGAAGTCAGAGTCTTTCTTCTCTTAAGCTTGAAAAGTGTTCTGGATTTTCTACTGATGGTCTTTACTATATTTGTCACTATTGCAAGAATTTAAGAGTCTTGTTTATGGAGGAAAGCTCCGTTCTTGAGAATGATGGCAAATGGCTTCATGAGCTTGCTTTGAATAATTCAGTTCTTGAGACACTGAATTTTTACTTGACTGATATTGCCAATATCAGAATTCAGGACCTTGAACTTTTAGCAAAAAACTGTCCTAACTTGGTCTCTATAAAAATTACTGATTGTGAAATCTTAAATCTGGTGAACTTCTTTCGATATGCAACTTCTCTAGAAGAATTTTGTGGAGGTTCCTATAATGAAGATCCAGAGAAGTATGCTGCTGTCTCATTACCAGCAAAGTTAAATCGATTGGGTTTGACGTATATTGGAAAGAATGAAATGCCAATTGTGTTCCCTTATGCAGCCCAACTGAAAAAGTTGGATCTTCTTTATGCAATGCTAGATACGGAGGATCATTGTACATTAATCGAAAAATGCCCCAACTTGGAAATCCTCGAGTCAAGGAATGTAATTGGAGACAGAGGATTAGAAGTACTTGCTCGCTGTTGTAAGAAGCTGAAAAGGCTAAGAATCGAAAGAGGGGATGATGATCAAGGAATGGAAGATGCAGAAGGCGTTGTTTCCCAAAGAGGACTGATTGCCTTATCACATGGCTGTCCAGAGCTTGAATATATGGCTGTATATGTATCTGACATCACAAACGCATCTCTAGAACATATCGGTACACATTTGAAAAACCTTTGTGACTTTCGCCTTGTCTTGCTAGACCGCGAGGAGAAGATAACTGATTTGCCACTCGACAATGGAGTGAGGGCTTTATTGAGAGGTTGTGACAAGCTTAGAAGATTTGCTCTATATCTCAGACCTGGAGGCTTAACTGATATAGGCCTAGGCTACATTGGACAATACAGTCCAAACGTGAGATGGATACTTCTCGGTTATGTCGGTGAAACCGATAAAGGGCTATTGGAATTCTCCAAAGGTTGTCCAAGTCTTCAGAAACTTGAAATGAGAGGATGTTCATTTTTCAGTGAATATGCACTAGCTGTTGCTGCAACTAGGTTAACATCTTTGAGGTATCTTTGGGTACAAGGCTATGGAGCATCGCCTTCTGGGCGCGATCTTTTGGCTATGGCGCGGCCCTATTGGAATATTGAGTTGATTCCTTCCAGACGTGTGCTTGTTAATAATCAACAAGGTCAGCCTGTTCCTATTGAGCATCCAGCTCATATTCTTGCTTATTACTCCCTTGCTGGACCAAGAGCAGATTTTCCTCATGATACTGTTAAACCTTTGTATCCTGCTGCAACATCGGGTGTTAACATGTAA 1785 0.4106 MEDTVIGRMNTILSDVVLDCVMPYIHDPKDRDAVSQVCKRWYEIDSSTRKHLTIALCYTTTPERLRRRFPHLESLKLKGKPRAAMFNLIPENWGGFVKPWIKEIENYFDCLKSLHFRRMIVTDADLLLLAKSRSQSLSSLKLEKCSGFSTDGLYYICHYCKNLRVLFMEESSVLENDGKWLHELALNNSVLETLNFYLTDIANIRIQDLELLAKNCPNLVSIKITDCEILNLVNFFRYATSLEEFCGGSYNEDPEKYAAVSLPAKLNRLGLTYIGKNEMPIVFPYAAQLKKLDLLYAMLDTEDHCTLIEKCPNLEILESRNVIGDRGLEVLARCCKKLKRLRIERGDDDQGMEDAEGVVSQRGLIALSHGCPELEYMAVYVSDITNASLEHIGTHLKNLCDFRLVLLDREEKITDLPLDNGVRALLRGCDKLRRFALYLRPGGLTDIGLGYIGQYSPNVRWILLGYVGETDKGLLEFSKGCPSLQKLEMRGCSFFSEYALAVAATRLTSLRYLWVQGYGASPSGRDLLAMARPYWNIELIPSRRVLVNNQQGQPVPIEHPAHILAYYSLAGPRADFPHDTVKPLYPAATSGVNM* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1170 594 Pfam F-box 13 51 IPR041567 -
Mal8g1170 594 Gene3D Ribonuclease Inhibitor 50 586 IPR032675 -
Mal8g1170 594 PANTHER CORONATINE-INSENSITIVE PROTEIN 1 10 585 - -
Mal8g1170 594 SMART LRR_CC_2 134 159 IPR006553 -
Mal8g1170 594 SMART LRR_CC_2 429 455 IPR006553 -
Mal8g1170 594 SMART LRR_CC_2 311 334 IPR006553 -
Mal8g1170 594 SMART LRR_CC_2 371 395 IPR006553 -
Mal8g1170 594 SMART LRR_CC_2 481 506 IPR006553 -
Mal8g1170 594 Pfam Transport inhibitor response 1 protein domain 70 116 IPR041101 -
Mal8g1170 594 SUPERFAMILY RNI-like 280 529 - -
Mal8g1170 594 Gene3D - 1 49 - -
Mal8g1170 594 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 10 585 - -
Mal8g1170 594 SUPERFAMILY RNI-like 88 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1170 Mal-Chr8 18228827 18232432 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1170 K13463 - gmx:100793081 1044.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g1170 8 18228827 18232432 Mal8g1170 8 18228827 18232432 ECH
Mal2g2756 2 36002880 36005358 Mal8g1170 8 18228827 18232432 PCT