Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g0215 ATGGCGAAAGTGGTGTACATGGCTTTACCTTTCCTTGCACAACCCCACAAAACAACCACAACTTCTTCTTCATCATCTTCTTCTTCTTCTTCTTCTTCTTCAAAACCATTCAATCTTCCTCATAGAACACGCCACACCAACATATCCATTCCCTCATCCGCCAATGGTTCTGCCAACCGTTCTGCTAAACCCCAGAAGCTTAATTCAGATGTTTCTCCTCACAGAGCTGTGTCTGCAGTGAGATTGATGAGAATTGAACTTGGTGGTGCTTTTGCTGACCTTCTCAATGAGAAAGGGAAAGGTTCTGGTGAAAATGAGATGGGTTATGTTCAAAGAACACTTGGATTTCGCACTCGAGAATTAAATAATCAAGACCTTAGATTGGTTACAGAGATTGTTGGGGGCACAATTCGTTGGAGGAGATACCTTGATCATTTAATCAGTTCATTGTGTCATGATAAAGATATATCCAGTATGGAACCTCTTCTCTTACAGATTCTACGAATTGGCTTCTATGAGATCGTCAAATTAGATATGCCACCTTATGCTGTTGTAGATGAGAATGTGCAGCTTGCCAAAGCTGCTCTCAGGCCGGGTGCTGGCAACATGGTCAATGGAGTCCTCCGAAAGCTAGTTGTGCTCAAGGAAAATGAAACTCTTCCTCTGCCCAAAGTGGAGGGTGATGATCGTTCTCAAGCACGTGCGCTGGCAACTCTCTACTCACATCCAGTTTGGATCGTAAGGAGGTGGACAAAGTATCTTGGCCAGGAAGAAGCCATTAAATTGATGATATGGAACAACAGTGAACCGAGTTATAGCTTAAGAGCAAATCGGGCAAAGGGTTTTTCAAGAGATGACCTTGTGACAGAGCTTAATGCATTGAAGGTCCCACACAAGCTTTCATTGCATTTGGATGACTTTGTTCGCATCAAAACTGGGTTGCAGGTTATAATTCATGCCGGCTTATTCAAAGAGGGTTTATGTTCAGTTCAGGATGAGAGTGCAGGTCTGATAGTTTCTATTGTGGATCCTCAACCTGGTGAGACCATCGTTGATTGTTGTGCTGCTCCTGGTGGAAAGACTCTCTACATGGCCGCTCATTTAAGTGGAAAAGGTATGGTATATGCAGTTGATGTAAATAGTGGTAGGTTGAGAATTCTTAAAGAGACAGCAAAGTTACACCAAGTAGATAGTGTTGTTACCACTGTCCATGCCGATCTTCGTACATTAACTGATGGTGAACCACTTAAGAGCAACAAAGTTTTGTTGGACGCACCATGCTCAGGACTTGGTGTTCTTTCAAAGAGAGCGGACTTACGTTGGAACAGGAAGTTGGAGGATATGGAAGAATTGAAGAAATTACAGGATGAGCTTCTGGATGCAGCATCCACATTGGTTAAACCTGGGGGAGTATTAGTTTACAGTACATGTTCTATAGATCCAGAAGAGAATGATGACAGGGTAGCTGCATTTCTAGTAAGACATCCGGATTTTCACATTGATCCTGTAGACAGATATGTTCCACCTGATTTTGTAACACCAAAAGGTTTCTATTTCTCCAATCCAGTAAAACATTCACTGGATGGCTCCTTTGCAGCTCGTTTGGTATGCGCTTTATAA 1620 0.4265 MAKVVYMALPFLAQPHKTTTTSSSSSSSSSSSSSKPFNLPHRTRHTNISIPSSANGSANRSAKPQKLNSDVSPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELNNQDLRLVTEIVGGTIRWRRYLDHLISSLCHDKDISSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVQLAKAALRPGAGNMVNGVLRKLVVLKENETLPLPKVEGDDRSQARALATLYSHPVWIVRRWTKYLGQEEAIKLMIWNNSEPSYSLRANRAKGFSRDDLVTELNALKVPHKLSLHLDDFVRIKTGLQVIIHAGLFKEGLCSVQDESAGLIVSIVDPQPGETIVDCCAAPGGKTLYMAAHLSGKGMVYAVDVNSGRLRILKETAKLHQVDSVVTTVHADLRTLTDGEPLKSNKVLLDAPCSGLGVLSKRADLRWNRKLEDMEELKKLQDELLDAASTLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFHIDPVDRYVPPDFVTPKGFYFSNPVKHSLDGSFAARLVCAL* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g0215 539 Pfam NusB family 106 212 IPR006027 GO:0003723|GO:0006355
Mal8g0215 539 PANTHER NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN 33 536 - -
Mal8g0215 539 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 233 536 IPR029063 -
Mal8g0215 539 TIGRFAM rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 116 535 IPR004573 GO:0006364|GO:0008649
Mal8g0215 539 MobiDBLite consensus disorder prediction 15 72 - -
Mal8g0215 539 Gene3D Sun protein; domain 3 229 335 - -
Mal8g0215 539 MobiDBLite consensus disorder prediction 15 73 - -
Mal8g0215 539 CDD AdoMet_MTases 349 475 - -
Mal8g0215 539 Pfam 16S rRNA methyltransferase RsmB/F 341 535 IPR001678 GO:0008168
Mal8g0215 539 Gene3D - 91 224 IPR035926 -
Mal8g0215 539 Gene3D Vaccinia Virus protein VP39 337 538 IPR029063 -
Mal8g0215 539 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 262 538 IPR001678 GO:0008168
Mal8g0215 539 PRINTS Viridiplantae FMU-related RCMT signature 219 232 IPR023268 -
Mal8g0215 539 PRINTS Viridiplantae FMU-related RCMT signature 80 103 IPR023268 -
Mal8g0215 539 PRINTS Viridiplantae FMU-related RCMT signature 496 508 IPR023268 -
Mal8g0215 539 PRINTS Viridiplantae FMU-related RCMT signature 104 120 IPR023268 -
Mal8g0215 539 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 33 536 IPR023267 GO:0001510
Mal8g0215 539 PRINTS RNA (C5-cytosine) methyltransferase signature 419 431 IPR023267 GO:0001510
Mal8g0215 539 PRINTS RNA (C5-cytosine) methyltransferase signature 469 485 IPR023267 GO:0001510
Mal8g0215 539 PRINTS RNA (C5-cytosine) methyltransferase signature 351 361 IPR023267 GO:0001510
Mal8g0215 539 PRINTS RNA (C5-cytosine) methyltransferase signature 322 336 IPR023267 GO:0001510
Mal8g0215 539 PRINTS RNA (C5-cytosine) methyltransferase signature 520 537 IPR023267 GO:0001510
Mal8g0215 539 SUPERFAMILY NusB-like 111 246 IPR035926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g0215 Mal-Chr8 3374307 3380811 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g0215 K03500 - gmx:100779327 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g0215 8 3374307 3380811 Mal8g0215 8 3374307 3380811 ECH