Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g3402 ATGGCACAAGCACAACGCGAAGAGAAGATTCAAGAAAAAAATCATGTTCAAGAAACAACAAGCAATTCAAGCTTCAAATTCAATGTTCAAGCGCCTGAATTTGTTCCAAGATCGCATTCTCAAGTTCCAATTTCTGGTTATTTCTATCCTTGTTTTCAGATTCTTGGTGGTTCTGGTGAATCTGATTGGTTCTACGTTGGTGATCATCAAGATCCTTCGTGTTTGATTCCTAATGCTACTGTTTCGCAACCGAATTGTTCGAAGAATGTGCTCAACCCTGATCTTCAACAGAAGATTGTTAAACAGGTGGAGTATCAGTTCAGTGACCTGAGTTTGCTAGCAAATGAATCTTTCCAGAAACAGATGAATAAGGATCCTGAAGGTTATGTTCCAATAACTGTGATTGCTTCAACGAAAAAGATCAAGGCGCTTGTTAACAACATTCATCTGCTTACACAAGCTATTCGTCATTCGTCAAAACTTGTTTTGAGTGCTGATGGCAAGAAGGTTAAACGCAAACATCCTTTCACTGAAAAGGAGAAAGAGGAATTGCAGTCTCGGACTGTTGTGGCAGAGAATTTACCTGACGATCATTCCCATCAAAATCTTCAGAAAATATTTTCCGTGGTTGGGAGCGTCAAAACGATCAGAATATGCCATCCCCAAGAACCGAATTCATCTCGCCCGAAAGGTGATTTCCTCATCAGTAACAAGCTACACGCACTTGTGGAGTATGAGACATCGGATATAGCTGACAAAGCTGTTGAGAAGTTAAACGATGAAAGGAATTGGAGGAAAGGGATGCGAGTAAGATTGCTGCTTAGATGCTCGCCAAAATCTGTTTTGAAGAATAGAAAGTCAGAGTTCGATGGCTATCTAGATGACGATGAGAATCTAAATTCTGAAACTGCTGAAGATTCTTCTCATCCTAACAACACTGAATCATGTGTTGAGAATAATGGTGATGAAACTTCAGTAGGATCAAAGAAAGGATGGGCTAGAGGTCGTGGAAAGGGAAGAGGACGCCCTCAAAACCATACCGGACGTGGCCTACTTGCCCCACCATCTCCATCAAGCAGCGTTGTCCTGAGTGAAGTATCGACTAAACCCAATGCAAAGGGCCCTAGAATGCCAGATGGAACAAGAGGTTTCGCTGTCGGACGAGGCAAGCCAATTAGTTCTCCCACTTCACCTCAGGAGTAA 1203 0.4223 MAQAQREEKIQEKNHVQETTSNSSFKFNVQAPEFVPRSHSQVPISGYFYPCFQILGGSGESDWFYVGDHQDPSCLIPNATVSQPNCSKNVLNPDLQQKIVKQVEYQFSDLSLLANESFQKQMNKDPEGYVPITVIASTKKIKALVNNIHLLTQAIRHSSKLVLSADGKKVKRKHPFTEKEKEELQSRTVVAENLPDDHSHQNLQKIFSVVGSVKTIRICHPQEPNSSRPKGDFLISNKLHALVEYETSDIADKAVEKLNDERNWRKGMRVRLLLRCSPKSVLKNRKSEFDGYLDDDENLNSETAEDSSHPNNTESCVENNGDETSVGSKKGWARGRGKGRGRPQNHTGRGLLAPPSPSSSVVLSEVSTKPNAKGPRMPDGTRGFAVGRGKPISSPTSPQE* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g3402 400 MobiDBLite consensus disorder prediction 290 400 - -
Mal7g3402 400 CDD RRM_La_like_plant 187 274 IPR034878 GO:0003723
Mal7g3402 400 MobiDBLite consensus disorder prediction 1 15 - -
Mal7g3402 400 MobiDBLite consensus disorder prediction 304 326 - -
Mal7g3402 400 Pfam La domain 99 156 IPR006630 -
Mal7g3402 400 SUPERFAMILY RNA-binding domain, RBD 171 274 IPR035979 GO:0003676
Mal7g3402 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 260 IPR000504 GO:0003723
Mal7g3402 400 PRINTS Lupus La protein signature 128 143 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Mal7g3402 400 PRINTS Lupus La protein signature 181 197 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Mal7g3402 400 PRINTS Lupus La protein signature 102 119 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Mal7g3402 400 PRINTS Lupus La protein signature 159 172 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Mal7g3402 400 PANTHER LA-RELATED PROTEIN 6C 7 394 - -
Mal7g3402 400 Gene3D - 179 274 IPR012677 -
Mal7g3402 400 Pfam Ataxin-2 C-terminal region 23 39 IPR009818 -
Mal7g3402 400 SUPERFAMILY "Winged helix" DNA-binding domain 92 176 IPR036390 -
Mal7g3402 400 MobiDBLite consensus disorder prediction 351 367 - -
Mal7g3402 400 Gene3D - 92 178 IPR036388 -
Mal7g3402 400 SMART la 93 173 IPR006630 -
Mal7g3402 400 PANTHER LUPUS LA PROTEIN-RELATED 7 394 IPR045180 -
Mal7g3402 400 MobiDBLite consensus disorder prediction 1 22 - -
Mal7g3402 400 SMART rrm1_1 188 273 IPR000504 GO:0003723
Mal7g3402 400 ProSiteProfiles La-type HTH domain profile. 89 180 IPR006630 -
Mal7g3402 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 272 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g3402 Mal-Chr7 98920922 98924012 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g3402 K15191 - gmx:100796786 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g3402 7 98920922 98924012 Mal7g3402 7 98920922 98924012 ECH