Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal7g2878 ATGGCTACCATTAATGGGAACACTGATGCTGCTCAACCCATTGTTGCTCCTACAAAACAGCCTCTTCCTCCTCCTAAGACCGTTGATTCCAACTCTGTTCTCAAAAGGTTGCAGTCTGAATTGATGTCTTTGATGATGAGTGGTGATTCTGGTATATCTGCTTTTCCTGAAGAGGACAACATATTCTTGTGGAAAGGAACAATAACAGGAAGCAAAGATACAGTGTTTGAAGGCACAGATTACAAGCTATCACTTTCTTTTCCTAATGATTACCCTTTTAAGGCTCCTAAAGTCAAGTTTGAAACTACCTGCTTCCATCCAAATGTTGATCTTCTTGGCAACATATGCTTGGACATACTTCAGGATAAATGGTCATCTGCTTATGATGTCAGAACAATTTTACTATCCATCCAAAGTCTTCTTGGAGAGCCAAACATAAGTTCACCACTAAATCCACAAGCAGCACAGCTTTGGAGCAATCAAGAAGATTACAGGAAGATGGTGGAGAAGTTGTACAAACCTCCAAATGCTACTGCTTAG 540 0.4037 MATINGNTDAAQPIVAPTKQPLPPPKTVDSNSVLKRLQSELMSLMMSGDSGISAFPEEDNIFLWKGTITGSKDTVFEGTDYKLSLSFPNDYPFKAPKVKFETTCFHPNVDLLGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNPQAAQLWSNQEDYRKMVEKLYKPPNATA* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal7g2878 179 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 105 120 IPR023313 -
Mal7g2878 179 SUPERFAMILY UBC-like 30 171 IPR016135 -
Mal7g2878 179 SMART ubc_7 35 177 - -
Mal7g2878 179 PANTHER BNAC06G03670D PROTEIN 17 175 - -
Mal7g2878 179 CDD UBCc 35 172 IPR000608 -
Mal7g2878 179 Pfam Ubiquitin-conjugating enzyme 36 170 IPR000608 -
Mal7g2878 179 MobiDBLite consensus disorder prediction 1 28 - -
Mal7g2878 179 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 32 177 IPR000608 -
Mal7g2878 179 Gene3D Ubiquitin Conjugating Enzyme 26 175 IPR016135 -
Mal7g2878 179 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 17 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal7g2878 Mal-Chr7 91441080 91443278 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal7g2878 31 141 Miscellaneous Gene Families AT3G17000 32.759 1.24e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal7g2878 K06688 - csv:101208947 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g2878 7 91441080 91443278 Mal7g2878 7 91441080 91443278 ECH